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427 Reviews — GigaScience — All Subjects

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AGOUTI: improving genome assembly and annotation using transcriptome data
Simo V Zhang, Luting Zhuo, Matthew W Hahn
10.1101/033019 — Posted: 2015-11-26 — Discussion: 2022-01-03  GigaScience
ISA API: An open platform for interoperable life science experimental metadata
Johnson, D., Cochrane, K., Davey, R. P., Etuk, A., Gonzalez-Beltran, A., Haug, K., Izzo, M., Larralde, M., Lawson, T. N., Minotto, A., Moreno, P., Nainala, V. C., O'Donovan, C., Pireddu, L., Roger, P., Shaw, F., Steinbeck, C., Weber, R. J., Sansone, S.-A., Rocca-Serra, P.
10.1101/2020.11.13.382119 — Posted: 2020-11-16 — Discussion: 2022-01-03  GigaScience
NCBI BLAST+ integrated into Galaxy
Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo
10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
Myth-busting the provider-user relationship for digital sequence information
Scholz, A. H., Lange, M., Habekost, P., Oldham, P., Cancio, I., Cochrane, G., Freitag, J.
10.1101/2021.08.02.454535 — Posted: 2021-08-03 — Discussion: 2022-01-03  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
An overview of the National COVID-19 Chest Imaging Database: data quality and cohort analysis
Cushnan, D., Bennett, O., Berka, R., Bertolli, O., Chopra, A., Dorgham, S., Favaro, A., Ganepola, T., Halling-Brown, M., Imreh, G., Jacob, J., Jefferson, E., Lemarchand, F., Schofield, D., Wyatt, J. C., NCCID Collaborative
10.1101/2021.03.02.21252444 — Posted: 2021-03-03 — Discussion: 2021-11-24  GigaScience
Beyond brain age: Empirically-derived proxy measures of mental health
Dadi, K., Varoquaux, G., Houenou, J., Bzdok, D., Thirion, B., Engemann, D. A.
10.1101/2020.08.25.266536 — Posted: 2020-08-25 — Discussion: 2021-10-29  GigaScience
Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.
Desvillechabrol, D., Bouchier, C., Kennedy, S., Cokelaer, T.
10.1101/092478 — Posted: 2016-12-08 — Discussion: 2021-10-26  GigaScience
Open Humans: A platform for participant-centered research and personal data exploration
Greshake Tzovaras, B., Arvai, K., Dulaney, M., Estrada-Galinanes, V., Gunderson, B., Head, T., Lewis, D., Nov, O., Shaer, O., Bobe, J., Price Ball, M.
10.1101/469189 — Posted: 2018-11-14 — Discussion: 2021-09-13  GigaScience

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