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416 Reviews — GigaScience — All Subjects

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NCBI BLAST+ integrated into Galaxy
Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo
10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03  GigaScience
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature
Lange, M., Alako, B., Cochrane, G., Ghaffar, M., Mascher, M., Habekost, P.-K., Hillebrand, U., Scholz, U., Zunder, F., Freitag, J., Scholz, A. H.
10.1101/2021.05.10.443393 — Posted: 2021-05-10 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets
Apurva Narechania, Richard H Baker, Rob DeSalle, Barun Mathema, Barry Kreiswirth, Sergios-Orestis Kolokotronis, Paul J Planet
10.1101/045773 — Posted: 2016-03-25 — Discussion: 2022-01-03  GigaScience
An overview of the National COVID-19 Chest Imaging Database: data quality and cohort analysis
Cushnan, D., Bennett, O., Berka, R., Bertolli, O., Chopra, A., Dorgham, S., Favaro, A., Ganepola, T., Halling-Brown, M., Imreh, G., Jacob, J., Jefferson, E., Lemarchand, F., Schofield, D., Wyatt, J. C., NCCID Collaborative
10.1101/2021.03.02.21252444 — Posted: 2021-03-03 — Discussion: 2021-11-24  GigaScience
Beyond brain age: Empirically-derived proxy measures of mental health
Dadi, K., Varoquaux, G., Houenou, J., Bzdok, D., Thirion, B., Engemann, D. A.
10.1101/2020.08.25.266536 — Posted: 2020-08-25 — Discussion: 2021-10-29  GigaScience
Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.
Desvillechabrol, D., Bouchier, C., Kennedy, S., Cokelaer, T.
10.1101/092478 — Posted: 2016-12-08 — Discussion: 2021-10-26  GigaScience
Open Humans: A platform for participant-centered research and personal data exploration
Greshake Tzovaras, B., Arvai, K., Dulaney, M., Estrada-Galinanes, V., Gunderson, B., Head, T., Lewis, D., Nov, O., Shaer, O., Bobe, J., Price Ball, M.
10.1101/469189 — Posted: 2018-11-14 — Discussion: 2021-09-13  GigaScience
Scalable Analysis of Multi-Modal Biomedical Data
Smith, J. M., Shi, Y., Benedikt, M., Nikolic, M.
10.1101/2020.12.14.422781 — Posted: 2020-12-15 — Discussion: 2021-09-12  GigaScience

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