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436 Reviews — All Partners — Genomics

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DNA methylation insulates genic regions from CTCF loops near nuclear speckles
Roseman, S. A., Siegenfeld, A. P., Lee, C., Lue, N. Z., Waterbury, A. L., Liau, B. B.
10.1101/2023.07.26.550645 — Posted: 2023-07-26 — Discussion: 2025-08-06  eLife
Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
Aramburu, O., Pardo, B. G., Rodriguez-Villamayor, P., Blanco Hortas, A., Lamas, J., Dewari, P. S., Perojil, D., Boudinot, P., Macqueen, D. J., Bouza, C., Martinez, P.
10.1101/2024.02.15.580452 — Posted: 2024-02-15 — Discussion: 2025-08-04  GigaScience
Chromosome-scale genome assembly of the European common cuttlefish Sepia officinalis
Rencken, S., Tushev, G., Hain, D., Ciirdaeva, E., Simakov, O., Laurent, G.
10.1101/2025.04.22.649952 — Posted: 2025-04-24 — Discussion: 2025-07-31  eLife
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2025-07-17  eLife
Epigenetic context predicts gene expression variation and reproductive traits across genetically identical individuals
Webster, A. K., Willis, J. H., Johnson, E., Sarkies, P., Phillips, P. C.
10.1101/2023.10.13.562270 — Posted: 2023-10-13 — Discussion: 2025-07-16  eLife
Chromosome-level reference genome for the medically important Arabian horned viper (Cerastes gasperettii)
Mochales Riano, G., Hirst, S. R., Talavera, A., Burriel-Carranza, B., Pagone, V., Estarellas, M., Busschau, T., Boissinot, S., Hogan, M. P., Tena-Garces, J., Pla, D., Calvete, J. J., Els, J., Margres, M. J., Carranza, S.
10.1101/2024.07.29.605543 — Posted: 2024-07-29 — Discussion: 2025-07-08  GigaScience
Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles
Yen, E. C., Gilbert, J. D., Balard, A., Taxonera, A., Fairweather, K., Ford, H. L., Thorburn, D.-M. J., Rossiter, S. J., Martin-Duran, J. M., Eizaguirre, C.
10.1101/2024.08.28.610089 — Posted: 2024-08-28 — Discussion: 2025-07-08  GigaScience
Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina
Bidard, F., Grognet, P., Lelandais, G., Imbeaud, S., Mucchielli-Giorgi, M. H., Debuchy, R., Berteaux-Lecellier, V., Malagnac, F.
10.1101/2024.12.09.627484 — Posted: 2024-12-11 — Discussion: 2025-07-04  Peer Community In
A pipeline to identify TF combinatorial binding uncovers TEAD1 as an antagonist of tissue-specific transcription factors in human organogenesis
Garcia-Mora, A., Mallen, J., Zarrineh, P., Hanley, N. A., Gerrard, D., Bobola, N.
10.1101/2023.10.05.561094 — Posted: 2023-10-07 — Discussion: 2025-06-10  eLife
The first near-complete genome assembly of pig: enabling more accurate genetic research
Cao, C., Miao, J., Xie, Q., Sun, J., Cheng, H., Zhang, Z., Wu, F., Liu, S., Ye, X., Zhang, Z., Wang, Q., Pan, Y., Wang, Z.
10.1101/2024.10.13.617951 — Posted: 2024-10-15 — Discussion: 2025-06-03  GigaScience

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