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473 Reviews — All Partners — Genomics

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Transcriptional perturbation of LINE-1 elements reveals their cis-regulatory potential
Perez-Rico, Y. A., Bousard, A., Misikova, L. H., Mulugeta, E., de Almeida, S. F., Muotri, A. R., Heard, E., Gendrel, A.-V.
10.1101/2024.02.20.581275 — Posted: 2024-02-20 — Discussion: 2026-03-11  Review Commons
Flexible and high-throughput simultaneous profiling of gene expression and chromatin accessibility in single cells
Soltys, V., Peters, M., Su, D., Kucka, M., Chan, Y. F.
10.1101/2024.02.26.581705 — Posted: 2024-02-28 — Discussion: 2026-03-03  eLife
Single-nucleus multiple-organ chromatin accessibility mapping in the rat
Li, R., Yuan, Y., Duan, S., Deng, Q., Ma, W., Liu, C., Gao, P., Lu, L., Liu, C.
10.1101/2024.11.11.622900 — Posted: 2024-11-11 — Discussion: 2026-02-24  GigaScience
Transition of Staphylococcus aureus tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years
Phillips, M. A., Petit, R. A., Weissman, D. B., Read, T. D.
10.1101/2025.09.14.675889 — Posted: 2025-09-15 — Discussion: 2026-02-19  eLife
Draft genome of Trichoderma gamsii strain T035 a promising beneficial fungus in agriculture
Colou, J., Robin, A., Bastide, F., Guillemette, T.
10.1101/2025.09.22.677720 — Posted: 2025-09-23 — Discussion: 2026-02-17  Peer Community In
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2026-02-09  eLife
Nuclear genome profiling of two Mexican orchids of the genus Epidendrum
Alcala-Gaxiola, M. A., Salazar, G. A., Hagsater, E., Flores-Iniestres, M. A., Cabrera, L. I., Avina-Rivera, A. I., Mercado-Ruaro, P., Magallon, S., Mendoza, C. G., Nunez-Ruiz, A., Soldevila, G., Urrutia, A., Meza-Lazaro, R. N.
10.1101/2025.09.17.675454 — Posted: 2025-09-20 — Discussion: 2026-02-07  Review Commons
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2026-02-06  eLife
Expression-Driven Genetic Dependency Reveals Targets for Precision Medicine
Elmas, A., Layden, H., Ellis, J., Barlett, L., Zhao, X., Kawabata-Iwakawa, R., Obinata, H., Hiebert, S., Huang, K.-l.
10.1101/2024.10.17.618926 — Posted: 2024-10-21 — Discussion: 2026-01-30  GigaScience
Evidence suggests that the SARS-CoV-2 Spike (S) protein may target coiled-coil regions of numerous cytoskeletal and cytoskeleton-associated proteins
Brezellec, P.
10.1101/2025.01.20.633897 — Posted: 2025-01-21 — Discussion: 2026-01-26  Peer Community In

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