bioRxiv/medRxiv TRiP Review Activity

454 Reviews — All Partners — Genomics

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Conservation of chromatin states and their association with transcription factors in land plants
Shukla, V., Axelsson, E., Hisanaga, T., Haseloff, J., Romani, F., Berger, F.
10.1101/2025.07.12.664529 — Posted: 2025-07-17 — Discussion: 2025-11-03  Review Commons
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Hartmann, U., Shaham, E., Nathan, D., Blech, I., Zeevi, D.
10.1101/2025.02.16.638517 — Posted: 2025-02-20 — Discussion: 2025-10-30  GigaScience
Genomic and epidemiologic characteristics of SARS-CoV-2 persistent infections in California, January 2021 - July 2023
Bell, J. M., Elder, J., Ryder, R., Smith, E. A., Scribner, M., Gilliam, S., Borthwick, D., Crumpler, M., Skarbinski, J., Morales, C., Wadford, D. A.
10.1101/2025.07.14.664650 — Posted: 2025-07-16 — Discussion: 2025-10-30  
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2025-10-20  eLife
The genetic control of rapid genome content divergence in Arabidopsis thaliana
Fiscus, C. J., Koenig, D.
10.1101/2025.06.11.659220 — Posted: 2025-06-16 — Discussion: 2025-10-20  eLife
Comparison of Infinium MethylationEPIC v2.0 to v1.0 for human population epigenetics: considerations for addressing EPIC version differences in DNA methylation-based tools
Zhuang, B. C., Jude, M. S., Konwar, C., Ryan, C. P., Whitehead, J., Engelbrecht, H.-R., MacIsaac, J. L., Dever, K., Toan, T. K., Korinek, K., Zimmer, Z., Huffman, K. M., Lee, N. R., McDade, T. W., Kuzawa, C. W., Belsky, D. W., Kobor, M. S.
10.1101/2024.07.02.600461 — Posted: 2024-07-03 — Discussion: 2025-10-07  EMBO Press
Chromatin accessibility variation provides insights into missing regulation underlying immune-mediated diseases
Jeong, R., Bulyk, M. L.
10.1101/2024.04.12.589213 — Posted: 2024-04-15 — Discussion: 2025-10-03  eLife
First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence
Arantes, L. S., Brown, T., De Panis, D., Whiting, S. D., LaCasella, E. L., Carvajal, G. A., Kennedy, A., Edmunds, D., Bentley, B. P., Balacco, J., Whelan, C., Jain, N., Tilley, T., O'Toole, B., Traore, P., Jarvis, E. D., Berry, O., Dutton, P. H., Komoroske, L. M., Mazzoni, C. J.
10.1101/2025.03.26.644878 — Posted: 2025-03-28 — Discussion: 2025-09-30  GigaScience
A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection
Arshad, F., Jayaraman, S., Talenti, A., Owen, R., Mohsin, M., Mansoor, S., Asif, M., Prendergast, J. G.
10.1101/2025.05.04.652079 — Posted: 2025-05-09 — Discussion: 2025-09-30  GigaScience

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