bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Predicting the effect of CRISPR-Cas9-based epigenome editing
Batra, S. S., Cabrera, A., Spence, J. P., Hilton, I., Song, Y. S.
10.1101/2023.10.03.560674 — Posted: 2023-10-03 — Discussion: 2025-05-23  eLife
Artificial Intelligence uncovers Evolutionarily Conserved Intracellular Allosteric Modulators of GPCR-Gα interface.
Mohanty, S. K., Mittal, A., Gaur, A., Solanki, S., Kumar, S., Duari, S., Arora, S., Gautam, V., Dixit, N. K., Ghosh, T. S., Sengupta, D., Gupta, S. K., Murugan, N. A., Ahuja, G.
10.1101/2023.02.14.528587 — Posted: 2023-02-15 — Discussion: 2025-05-23  eLife
Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells
Dehghannasiri, R., Henderson, G., Bierman, R., Chaung, K., Baharav, T. Z., Wang, P. L., Salzman, J.
10.1101/2022.12.06.519414 — Posted: 2022-12-07 — Discussion: 2025-05-22  eLife
Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions
Verneret, M., Le, V. A., Faraut, T., Turpin, J., Lerat, E.
10.1101/2024.09.25.614865 — Posted: 2024-09-26 — Discussion: 2025-05-21  Peer Community In
Pathway activation model for personalized prediction of drug synergy
Trac, Q. T., Huang, Y., Erkers, T., Östling, P., Bohlin, A., Osterroos, A., Vesterlund, M., Jafari, R., Siavelis, I., Backvall, H., Kiviluoto, S., Orre, L., Rantalainen, M., Lehtiö, J., Lehmann, S., Kallioniemi, O., Pawitan, Y., Vu, T. N.
10.1101/2024.06.05.597583 — Posted: 2024-06-08 — Discussion: 2025-05-20  eLife
DICE: Fast and Accurate Distance-Based Reconstruction of Single-Cell Copy Number Phylogenies
Weiner, S., Bansal, M. S.
10.1101/2024.06.03.597037 — Posted: 2024-06-04 — Discussion: 2025-05-20  EMBO Press
MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets
Gallean, B., Laurent, T., Biasuz, K., Clement, A., Faraj, N., Lemaire, P., Faure, E.
10.1101/2025.02.21.639560 — Posted: 2025-03-01 — Discussion: 2025-05-12  eLife
Identification and classification of ion-channels across the tree of life: Insights into understudied CALHM channels
Taujale, R., Park, S. J., Gravel, N., Soleymani, S., Carter, R., Boyd, K., Keuning, S., Ruan, Z., Lü, W., Kannan, N.
10.1101/2025.02.10.637530 — Posted: 2025-02-18 — Discussion: 2025-05-09  eLife
AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface
Zhou, Y., Liu, W., Huang, Z., Gou, Y., Liu, S., Jiang, L., Yang, Y., Huang, J.
10.1101/2024.11.12.623267 — Posted: 2024-11-17 — Discussion: 2025-05-09  eLife
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Osorio, D., Tekpli, X., Kristensen, V. N., Kuijjer, M. L.
10.1101/2022.03.31.486602 — Posted: 2022-04-01 — Discussion: 2025-05-09  eLife

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