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448 Reviews — GigaScience — All Subjects

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BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
Efficient and accurate detection of splice junctions from RNAseq with Portcullis
Mapleson, D., Venturini, L., Kaithakottil, G., Swarbreck, D.
10.1101/217620 — Posted: 2017-11-10 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience
Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola
Grigorev, K., Kliver, S., Dobrynin, P., Komissarov, A., Wolfsberger, W., Krasheninnikova, K., Afanador-Hernandez, Y. M., Paulino, L. A., Carreras, R., Rodriguez, L. E., Nunez, A., Silva, F., Hernandez-Martich, D., Majeske, A. J., Antunes, A., Roca, A. L., O'Brien, S. J., Martinez-Cruzado, J. C., Oleksyk, T. K.
10.1101/164574 — Posted: 2017-07-18 — Discussion: 2022-01-22  GigaScience
Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data
Sadedin, S., Ellis, J., Masters, S., Oshlack, A.
10.1101/260927 — Posted: 2018-02-06 — Discussion: 2022-01-22  GigaScience
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.
10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22  GigaScience
Real-time DNA barcoding in a remote rainforest using nanopore sequencing
Pomerantz, A., Penafiel, N., Arteaga, A., Bustamante, L., Pichardo, F., Coloma, L. A., Barrio-Amoros, C. L., Salazar-Valenzuela, D., Prost, S.
10.1101/189159 — Posted: 2017-09-15 — Discussion: 2022-01-22  GigaScience
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Alakwaa, F., Huang, S., Garmire, L.
10.1101/283408 — Posted: 2018-03-16 — Discussion: 2022-01-22  GigaScience
PhenoSpD: an atlas of phenotypic correlations and a multiple testing correction for the human phenome
Zheng, J., Richardson, T., Millard, L., Hemani, G., Raistrick, C., Vilhjalmsson, B., Haycock, P., Gaunt, T.
10.1101/148627 — Posted: 2017-06-10 — Discussion: 2022-01-22  GigaScience
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Peters, K., Bradbury, J., Bergmann, S., Capuccini, M., Cascante, M., de Atauri, P., Ebbels, T., Foguet, C., Glen, R., Gonzalez-Beltran, A., Handakas, E., Hankemeier, T., Herman, S., Haug, K., Holub, P., Izzo, M., Jacob, D., Johnson, D., Jourdan, F., Kale, N., Karaman, I., Khalili, B., Emami Khoonsari, P., Kultima, K., Lampa, S., Larsson, A., Moreno, P., Neumann, S., Novella, J. A., O'Donovan, C., Pearce, J. T., Peluso, A., Pireddu, L., Piras, M. E., Reed, M. A., Rocca-Serra, P., Roger, P., Rosato, A., Rueedi, R., Ruttkies, C., Sadawi, N., Salek, R., Sansone, S.-A., Selivanov, V., Spjuth, O.
10.1101/409151 — Posted: 2018-09-06 — Discussion: 2022-01-22  GigaScience

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