bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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Clinker: visualising fusion genes detected in RNA-seq data
Schmidt, B. M., Davidson, N. M., Hawkins, A. D., Bartolo, R., Majewski, I. J., Ekert, P. G., Oshlack, A.
10.1101/218586 — Posted: 2017-11-13 — Discussion: 2022-01-22  GigaScience
BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads
Armstrong, E. E., Taylor, R. W., Prost, S., Blinston, P., van der Meer, E., Madzikanda, H., Mufute, O., Mandisodza, R., Steulpnagel, J., Sillero-Zubiri, C., Petrov, D.
10.1101/195180 — Posted: 2017-09-27 — Discussion: 2022-01-22  GigaScience
Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data
Nguyen, Q. H., Tellam, R. L., Naval-Sanchez, M., Porto-Neto, L., Barendse, B. W., Reverter-Gomez, T., Hayes, B., Kijas, J., Dalrymple, B. P.
10.1101/143990 — Posted: 2017-06-05 — Discussion: 2022-01-22  GigaScience
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience
Single molecule, full-length transcript sequencing provides insight into the extreme metabolism of ruby-throated hummingbird Archilochus colubris
Workman, R. E., Myrka, A. M., Tseng, E., Wong, G. W., Welch, K. C., Timp, W.
10.1101/117218 — Posted: 2017-03-15 — Discussion: 2022-01-22  GigaScience
Error Correcting Optical Mapping Data
Mukherjee, K., Washimkar, D., Muggli, M. D., Salmela, L., Boucher, C.
10.1101/285692 — Posted: 2018-03-21 — Discussion: 2022-01-22  GigaScience
Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria
Thorpe, H. A., Bayliss, S. C., Sheppard, S. K., Feil, E. J.
10.1101/179515 — Posted: 2017-08-22 — Discussion: 2022-01-22  GigaScience
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.
10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience

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