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442 Reviews — GigaScience — All Subjects

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Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads
Armstrong, E. E., Taylor, R. W., Prost, S., Blinston, P., van der Meer, E., Madzikanda, H., Mufute, O., Mandisodza, R., Steulpnagel, J., Sillero-Zubiri, C., Petrov, D.
10.1101/195180 — Posted: 2017-09-27 — Discussion: 2022-01-22  GigaScience
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Johnson, L. K., Alexander, H., Brown, C. T.
10.1101/323576 — Posted: 2018-05-17 — Discussion: 2022-01-22  GigaScience
Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data
Nguyen, Q. H., Tellam, R. L., Naval-Sanchez, M., Porto-Neto, L., Barendse, B. W., Reverter-Gomez, T., Hayes, B., Kijas, J., Dalrymple, B. P.
10.1101/143990 — Posted: 2017-06-05 — Discussion: 2022-01-22  GigaScience
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution
Xia, L. C., Ai, D., Lee, H., Andor, N., Li, C., Zhang, N. R., Ji, H. P.
10.1101/247536 — Posted: 2018-01-12 — Discussion: 2022-01-22  GigaScience
Independent assessment and improvement of wheat genome assemblies using Fosill jumping libraries
Lu, F.-H., McKenzie, N., Kettleborough, G., Heavens, D., Clark, M. D., Bevan, M. W.
10.1101/219352 — Posted: 2017-11-14 — Discussion: 2022-01-22  GigaScience
Single molecule, full-length transcript sequencing provides insight into the extreme metabolism of ruby-throated hummingbird Archilochus colubris
Workman, R. E., Myrka, A. M., Tseng, E., Wong, G. W., Welch, K. C., Timp, W.
10.1101/117218 — Posted: 2017-03-15 — Discussion: 2022-01-22  GigaScience
MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data
Simon, L. M., Karg, S., Westermann, A. J., Engel, M., Elbehery, A. H., Hense, B., Heinig, M., Deng, L., Theis, F. J.
10.1101/269092 — Posted: 2018-02-22 — Discussion: 2022-01-22  GigaScience
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex
Lantyer, A. d. S., Calcini, N., Biljsma, A., Kole, K., Emmelkamp, M., Peeters, M., Scheenen, W. J. J., Zeldenrust, F., Celikel, T.
10.1101/472043 — Posted: 2018-11-17 — Discussion: 2022-01-22  GigaScience
FAST-SG: An alignment-free algorithm for hybrid assembly
Di Genova, A., Ruz, G. A., Sagot, M.-F., Maass, A.
10.1101/209122 — Posted: 2017-10-26 — Discussion: 2022-01-22  GigaScience
SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)
Formenti, G., Chiara, M., Poveda, L., Francoijs, K.-J., Bonisoli-Alquati, A., Canova, L., Gianfranceschi, L. E. A., Horner, D., Saino, N.
10.1101/374512 — Posted: 2018-07-23 — Discussion: 2022-01-22  GigaScience

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