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434 Reviews — GigaScience — All Subjects

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Real-time DNA barcoding in a remote rainforest using nanopore sequencing
Pomerantz, A., Penafiel, N., Arteaga, A., Bustamante, L., Pichardo, F., Coloma, L. A., Barrio-Amoros, C. L., Salazar-Valenzuela, D., Prost, S.
10.1101/189159 — Posted: 2017-09-15 — Discussion: 2022-01-22  GigaScience
PhenoSpD: an atlas of phenotypic correlations and a multiple testing correction for the human phenome
Zheng, J., Richardson, T., Millard, L., Hemani, G., Raistrick, C., Vilhjalmsson, B., Haycock, P., Gaunt, T.
10.1101/148627 — Posted: 2017-06-10 — Discussion: 2022-01-22  GigaScience
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.
10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience
Aequatus: An open-source homology browser
Anil S. Thanki, Sarah Ayling, Javier Herrero, Robert P. Davey
10.1101/055632 — Posted: 2016-05-27 — Discussion: 2022-01-22  GigaScience
Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data
Sadedin, S., Ellis, J., Masters, S., Oshlack, A.
10.1101/260927 — Posted: 2018-02-06 — Discussion: 2022-01-22  GigaScience
Efficient and accurate detection of splice junctions from RNAseq with Portcullis
Mapleson, D., Venturini, L., Kaithakottil, G., Swarbreck, D.
10.1101/217620 — Posted: 2017-11-10 — Discussion: 2022-01-22  GigaScience
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Peters, K., Bradbury, J., Bergmann, S., Capuccini, M., Cascante, M., de Atauri, P., Ebbels, T., Foguet, C., Glen, R., Gonzalez-Beltran, A., Handakas, E., Hankemeier, T., Herman, S., Haug, K., Holub, P., Izzo, M., Jacob, D., Johnson, D., Jourdan, F., Kale, N., Karaman, I., Khalili, B., Emami Khoonsari, P., Kultima, K., Lampa, S., Larsson, A., Moreno, P., Neumann, S., Novella, J. A., O'Donovan, C., Pearce, J. T., Peluso, A., Pireddu, L., Piras, M. E., Reed, M. A., Rocca-Serra, P., Roger, P., Rosato, A., Rueedi, R., Ruttkies, C., Sadawi, N., Salek, R., Sansone, S.-A., Selivanov, V., Spjuth, O.
10.1101/409151 — Posted: 2018-09-06 — Discussion: 2022-01-22  GigaScience
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Alakwaa, F., Huang, S., Garmire, L.
10.1101/283408 — Posted: 2018-03-16 — Discussion: 2022-01-22  GigaScience
NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform
Calus, S. T., Ijaz, U. Z., Pinto, A. J.
10.1101/244517 — Posted: 2018-01-07 — Discussion: 2022-01-22  GigaScience

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