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470 Reviews — All Partners — Genomics

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A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
Josh Quick, Aaron Quinlan, Nicholas Loman
10.1101/009613 — Posted: 2014-09-26 — Discussion: 2022-01-03  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
Environmentally sensitive hotspots in the methylome of the early human embryo
Silver, M. J., Saffari, A., Kessler, N. J., Chandak, G. R., Fall, C. H., Issarapu, P., Dedaniya, A., Betts, M., Moore, S. E., James, P. T., Monk, D., Prentice, A. M.
10.1101/777508 — Posted: 2019-09-23 — Discussion: 2021-12-21  eLife
High-resolution mapping of DNA alkylation damage and base excision repair at yeast transcription factor binding sites
Mao, P., Duan, M., Sivapragasam, S., Antony, J. S., Ulibarri, J., Hinz, J. M., Poon, G. M. K., Wyrick, J. J.
10.1101/2021.09.24.461700 — Posted: 2021-09-24 — Discussion: 2021-12-20  eLife
Evolution of binding preferences among whole-genome duplicated transcription factors
Gera, T., Jonas, F., More, R., Barkai, N.
10.1101/2021.07.27.453962 — Posted: 2021-07-27 — Discussion: 2021-12-20  eLife
Comparative poly(A)+ RNA interactome capture of fission yeast RNA exosome mutants reveals insights into RNA biogenesis
Birot, A., Kilchert, C., Kus, K., Priest, E., Alwash, A., Heo, D.-H., Castello, A., Mohammed, S., Vasilieva, L.
10.1101/2020.07.01.181719 — Posted: 2020-07-04 — Discussion: 2021-12-15  EMBO Press
Quantitative prediction of variant effects on alternative splicing using endogenous pre-messenger RNA structure probing
Kumar, J., Lackey, L., Waldern, J. M., Dey, A., Mathews, D., Laederach, A.
10.1101/2021.09.13.460117 — Posted: 2021-09-13 — Discussion: 2021-12-14  eLife
A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
Peel, E., Silver, L., Brandies, P., Hogg, C. J., Belov, K.
10.1101/2021.12.07.471656 — Posted: 2021-12-08 — Discussion: 2021-12-09  Gigabyte
Genome-wide association study in the pseudocereal quinoa reveals selection pattern typical for crops with a short breeding history
Patirange, D. S. R., Rey, E., Emrani, N., Wellman, G., Schmid, K., Schmoeckel, S. M., Tester, M., Jung, C.
10.1101/2020.12.03.410050 — Posted: 2020-12-03 — Discussion: 2021-12-01  eLife

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