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475 Reviews — All Partners — Genomics

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High-resolution mapping of DNA alkylation damage and base excision repair at yeast transcription factor binding sites
Mao, P., Duan, M., Sivapragasam, S., Antony, J. S., Ulibarri, J., Hinz, J. M., Poon, G. M. K., Wyrick, J. J.
10.1101/2021.09.24.461700 — Posted: 2021-09-24 — Discussion: 2021-12-20  eLife
Comparative poly(A)+ RNA interactome capture of fission yeast RNA exosome mutants reveals insights into RNA biogenesis
Birot, A., Kilchert, C., Kus, K., Priest, E., Alwash, A., Heo, D.-H., Castello, A., Mohammed, S., Vasilieva, L.
10.1101/2020.07.01.181719 — Posted: 2020-07-04 — Discussion: 2021-12-15  EMBO Press
Quantitative prediction of variant effects on alternative splicing using endogenous pre-messenger RNA structure probing
Kumar, J., Lackey, L., Waldern, J. M., Dey, A., Mathews, D., Laederach, A.
10.1101/2021.09.13.460117 — Posted: 2021-09-13 — Discussion: 2021-12-14  eLife
A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
Peel, E., Silver, L., Brandies, P., Hogg, C. J., Belov, K.
10.1101/2021.12.07.471656 — Posted: 2021-12-08 — Discussion: 2021-12-09  Gigabyte
Genome-wide association study in the pseudocereal quinoa reveals selection pattern typical for crops with a short breeding history
Patirange, D. S. R., Rey, E., Emrani, N., Wellman, G., Schmid, K., Schmoeckel, S. M., Tester, M., Jung, C.
10.1101/2020.12.03.410050 — Posted: 2020-12-03 — Discussion: 2021-12-01  eLife
De novo chromosome level assembly of the mule deer (Odocoileus hemionus) genome
Lamb, S., Taylor, A. M., Hughes, T. A., McMillan, B. R., Larsen, R. T., Khan, R., Weisz, D., Dudchenko, O., Aiden, E. L., Frandsen, P. B.
10.1101/2021.08.12.456132 — Posted: 2021-08-12 — Discussion: 2021-11-24  Gigabyte
Higher-order chromatin organization defines PR and PAX2 binding to regulate endometrial cancer cell gene expression
La Greca, A., Bellora, N., Le Dily, F., Jara, R., Quilez, J., Merino, G., Fresno, C., Tarifa Rieschle, I., Vallejo, G., Vicent, G., Fernandez, E., Beato, M., Saragüeta, P.
10.1101/739466 — Posted: 2019-08-20 — Discussion: 2021-11-23  eLife
Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes
Chang, C.-H., Gregory, L. E., Gordon, K. E., Meiklejohn, C. D., Larracuente, A.
10.1101/2021.08.16.456461 — Posted: 2021-08-16 — Discussion: 2021-11-23  Review Commons
Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites and Chromatin
Chan, M., Yuan, H., Soifer, I., Maile, T. M., Wang, R. Y., Ireland, A., O'Brien, J., Goudeau, J., Chan, L., Vijay, T., Freund, A., Kenyon, C., Bennett, B., McAllister, F., Kelley, D. R., Roy, M., Cohen, R. L., Levinson, A. D., Botstein, D., Hendrickson, D.
10.1101/2021.05.03.442497 — Posted: 2021-05-04 — Discussion: 2021-11-17  eLife
How ancient forest fragmentation and riparian connectivity generate high levels of genetic diversity in a micro-endemic Malagasy tree
Salmona, J., Dresen, A., Ranaivoson, A. E., Manzi, S., Le Pors, B., Hong-Wa, C., Razanatsoa, J., Andriaholinirina, N. V., Rasoloharijaona, S., Vavitsara, M.-E., Besnard, G.
10.1101/2020.11.25.394544 — Posted: 2020-11-26 — Discussion: 2021-11-12  Peer Community In

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