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475 Reviews — All Partners — Genomics

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BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Peng, Y., Tang, S., WANG, D., Zhong, H., Jia, H., Cai, X., Zhang, Z., Xiao, M., Yang, H., Wang, J., Kristiansen, K., Xu, X., li, j.
10.1101/398636 — Posted: 2018-08-24 — Discussion: 2022-01-22  GigaScience
Whole genome hybrid assembly and protein-coding gene annotation of the entirely black native Korean chicken breed Yeonsan Ogye
Sohn, J.-i., Nam, K., Kim, J.-M., Lim, D., Lee, K.-T., Do, Y. J., Cho, C. Y., Kim, N., Nam, J.-W., Chae, H.-H.
10.1101/224311 — Posted: 2017-11-24 — Discussion: 2022-01-22  GigaScience
Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria
Thorpe, H. A., Bayliss, S. C., Sheppard, S. K., Feil, E. J.
10.1101/179515 — Posted: 2017-08-22 — Discussion: 2022-01-22  GigaScience
Network based conditional genome wide association analysis of human metabolomics
Tsepilov, Y. A., Sharapov, S. Z., Zaytseva, O. O., Krumsiek, J., Prehn, C., Adamski, J., Kastenmuller, G., Wang-Sattler, R., Strauch, K., Gieger, C., Aulchenko, Y. S.
10.1101/096982 — Posted: 2016-12-27 — Discussion: 2022-01-22  GigaScience
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation
Miller, J. R., Koren, S., Dilley, K. A., Puri, V., Brown, D. M., Harkins, D. M., Thibaud-Nissen, F., Rosen, B., Chen, X.-G., Tu, Z., Sharakhov, I. V., Sharakhova, M. V., Sebra, R., Stockwell, T. B., Bergman, N. H., Sutton, G. G., Phillippy, A. M., Piermarini, P. M., Shabman, R. S.
10.1101/157081 — Posted: 2017-06-30 — Discussion: 2022-01-21  GigaScience
Inter-tissue convergence of gene expression and loss of cellular identity during ageing
Izgi, H., Han, D., Isildak, U., Huang, S., Kocabiyik, E., Khaitovich, P., Somel, M., Dönertas, H. M.
10.1101/2021.03.02.432281 — Posted: 2021-03-02 — Discussion: 2022-01-18  eLife
Ancient genomes redate the extinction of Sussemionus, a subgenus of Equus, to late Holocene
Cai, D., Zhu, S., Gong, M., Zhang, N., Wen, J., Liang, Q., Sun, W., Shao, X., Guo, Y., Cai, Y., Zheng, Z., Zhang, W., Hu, S., Wang, X., Tian, H., Li, Y., Liu, W., Yang, M., Yang, J., Wu, D., Orlando, L., Jiang, Y.
10.1101/2021.09.13.460072 — Posted: 2021-09-16 — Discussion: 2022-01-17  eLife
Unexpected gene activation following CRISPR-Cas9-mediated genome editing
Manjon, A. G., Teunissen, H., de Wit, E., Medema, R. H.
10.1101/2021.06.14.448328 — Posted: 2021-06-14 — Discussion: 2022-01-15  EMBO Press
Genetic Control of Pluripotency Epigenome Determines Differentiation Bias in Mouse Embryonic Stem Cells
Byers, C., Spruce, C., Fortin, H. J., Czechanski, A., Munger, S. C., Reinholdt, L. G., Skelly, D. A., Baker, C. L.
10.1101/2021.01.15.426861 — Posted: 2021-01-16 — Discussion: 2022-01-15  EMBO Press

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