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470 Reviews — All Partners — Genomics

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Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation
Miller, J. R., Koren, S., Dilley, K. A., Puri, V., Brown, D. M., Harkins, D. M., Thibaud-Nissen, F., Rosen, B., Chen, X.-G., Tu, Z., Sharakhov, I. V., Sharakhova, M. V., Sebra, R., Stockwell, T. B., Bergman, N. H., Sutton, G. G., Phillippy, A. M., Piermarini, P. M., Shabman, R. S.
10.1101/157081 — Posted: 2017-06-30 — Discussion: 2022-01-21  GigaScience
Inter-tissue convergence of gene expression and loss of cellular identity during ageing
Izgi, H., Han, D., Isildak, U., Huang, S., Kocabiyik, E., Khaitovich, P., Somel, M., Dönertas, H. M.
10.1101/2021.03.02.432281 — Posted: 2021-03-02 — Discussion: 2022-01-18  eLife
Ancient genomes redate the extinction of Sussemionus, a subgenus of Equus, to late Holocene
Cai, D., Zhu, S., Gong, M., Zhang, N., Wen, J., Liang, Q., Sun, W., Shao, X., Guo, Y., Cai, Y., Zheng, Z., Zhang, W., Hu, S., Wang, X., Tian, H., Li, Y., Liu, W., Yang, M., Yang, J., Wu, D., Orlando, L., Jiang, Y.
10.1101/2021.09.13.460072 — Posted: 2021-09-16 — Discussion: 2022-01-17  eLife
Unexpected gene activation following CRISPR-Cas9-mediated genome editing
Manjon, A. G., Teunissen, H., de Wit, E., Medema, R. H.
10.1101/2021.06.14.448328 — Posted: 2021-06-14 — Discussion: 2022-01-15  EMBO Press
Genetic Control of Pluripotency Epigenome Determines Differentiation Bias in Mouse Embryonic Stem Cells
Byers, C., Spruce, C., Fortin, H. J., Czechanski, A., Munger, S. C., Reinholdt, L. G., Skelly, D. A., Baker, C. L.
10.1101/2021.01.15.426861 — Posted: 2021-01-16 — Discussion: 2022-01-15  EMBO Press
Draft genome of the Reindeer (Rangifer tarandus)
Li, Z., Lin, Z., Chen, L., Ba, H., Yang, Y., Wang, K., Wang, W., Qiu, Q., Li, G.
10.1101/154724 — Posted: 2017-06-23 — Discussion: 2022-01-14  GigaScience
Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy
Albuquerque, M. A., Grande, B. M., Ritch, E., Jessa, S., Krzywinski, M. I., Grewal, J., Shah, S., Boutros, P., Morin, R.
10.1101/089631 — Posted: 2016-11-26 — Discussion: 2022-01-13  GigaScience
Indexcov: fast coverage quality control for whole-genome sequencing
Pedersen, B. S., Collins, R. L., Talkwoski, M. E., Quinlan, A. R.
10.1101/148296 — Posted: 2017-06-09 — Discussion: 2022-01-13  GigaScience
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
Zimin, A. V., Puiu, D., Hall, R., Kingan, S., Salzberg, S. L.
10.1101/159111 — Posted: 2017-07-03 — Discussion: 2022-01-13  GigaScience
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Boris Simovski, Daniel Vodak, Sveinung Gundersen, Diana Domanska, Abdulrahman Azab, Lars Holden, Marit Holden, Ivar Grytten, Knut Dagestad Rand, Finn Drablos, Morten Johansen, Antonio Mora, Christin Lund-Andersen, Bastian Fromm, Ragnhild Eskeland, Odd Stokke Gabrielsen, Sigve Nakken, Mads Bengtsen, Alexander Johan Nederbragt, Hildur Sif Thorarensen, Johannes Andreas Akse, Ingrid Glad, Eivind Hovig, Geir Kjetil Sandve
10.1101/067561 — Posted: 2016-08-03 — Discussion: 2022-01-13  GigaScience

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