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442 Reviews — GigaScience — All Subjects

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Arabidopsis phenotyping through Geometric Morphometrics
Manacorda, C. A., Asurmendi, S.
10.1101/194449 — Posted: 2017-09-27 — Discussion: 2022-01-22  GigaScience
Monitoring changes in the Gene Ontology and their impact on genomic data analysis
Jacobson, M., Sedeno-Cortes, A. E., Pavlidis, P.
10.1101/320861 — Posted: 2018-05-13 — Discussion: 2022-01-22  GigaScience
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Parekh, S., Ziegenhain, C., Vieth, B., Enard, W., Hellmann, I.
10.1101/153940 — Posted: 2017-06-22 — Discussion: 2022-01-22  GigaScience
Clinker: visualising fusion genes detected in RNA-seq data
Schmidt, B. M., Davidson, N. M., Hawkins, A. D., Bartolo, R., Majewski, I. J., Ekert, P. G., Oshlack, A.
10.1101/218586 — Posted: 2017-11-13 — Discussion: 2022-01-22  GigaScience
BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience
Error Correcting Optical Mapping Data
Mukherjee, K., Washimkar, D., Muggli, M. D., Salmela, L., Boucher, C.
10.1101/285692 — Posted: 2018-03-21 — Discussion: 2022-01-22  GigaScience
ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations
Yu, S.-H., Vogel, J., Foerstner, K. U.
10.1101/143081 — Posted: 2017-05-27 — Discussion: 2022-01-22  GigaScience
Network based conditional genome wide association analysis of human metabolomics
Tsepilov, Y. A., Sharapov, S. Z., Zaytseva, O. O., Krumsiek, J., Prehn, C., Adamski, J., Kastenmuller, G., Wang-Sattler, R., Strauch, K., Gieger, C., Aulchenko, Y. S.
10.1101/096982 — Posted: 2016-12-27 — Discussion: 2022-01-22  GigaScience
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.
10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22  GigaScience

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