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424 Reviews — GigaScience — All Subjects

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MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data
Simon, L. M., Karg, S., Westermann, A. J., Engel, M., Elbehery, A. H., Hense, B., Heinig, M., Deng, L., Theis, F. J.
10.1101/269092 — Posted: 2018-02-22 — Discussion: 2022-01-22  GigaScience
Independent assessment and improvement of wheat genome assemblies using Fosill jumping libraries
Lu, F.-H., McKenzie, N., Kettleborough, G., Heavens, D., Clark, M. D., Bevan, M. W.
10.1101/219352 — Posted: 2017-11-14 — Discussion: 2022-01-22  GigaScience
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex
Lantyer, A. d. S., Calcini, N., Biljsma, A., Kole, K., Emmelkamp, M., Peeters, M., Scheenen, W. J. J., Zeldenrust, F., Celikel, T.
10.1101/472043 — Posted: 2018-11-17 — Discussion: 2022-01-22  GigaScience
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Peng, Y., Tang, S., WANG, D., Zhong, H., Jia, H., Cai, X., Zhang, Z., Xiao, M., Yang, H., Wang, J., Kristiansen, K., Xu, X., li, j.
10.1101/398636 — Posted: 2018-08-24 — Discussion: 2022-01-22  GigaScience
Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola
Grigorev, K., Kliver, S., Dobrynin, P., Komissarov, A., Wolfsberger, W., Krasheninnikova, K., Afanador-Hernandez, Y. M., Paulino, L. A., Carreras, R., Rodriguez, L. E., Nunez, A., Silva, F., Hernandez-Martich, D., Majeske, A. J., Antunes, A., Roca, A. L., O'Brien, S. J., Martinez-Cruzado, J. C., Oleksyk, T. K.
10.1101/164574 — Posted: 2017-07-18 — Discussion: 2022-01-22  GigaScience
FAST-SG: An alignment-free algorithm for hybrid assembly
Di Genova, A., Ruz, G. A., Sagot, M.-F., Maass, A.
10.1101/209122 — Posted: 2017-10-26 — Discussion: 2022-01-22  GigaScience
Real-time DNA barcoding in a remote rainforest using nanopore sequencing
Pomerantz, A., Penafiel, N., Arteaga, A., Bustamante, L., Pichardo, F., Coloma, L. A., Barrio-Amoros, C. L., Salazar-Valenzuela, D., Prost, S.
10.1101/189159 — Posted: 2017-09-15 — Discussion: 2022-01-22  GigaScience
SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)
Formenti, G., Chiara, M., Poveda, L., Francoijs, K.-J., Bonisoli-Alquati, A., Canova, L., Gianfranceschi, L. E. A., Horner, D., Saino, N.
10.1101/374512 — Posted: 2018-07-23 — Discussion: 2022-01-22  GigaScience
Monitoring changes in the Gene Ontology and their impact on genomic data analysis
Jacobson, M., Sedeno-Cortes, A. E., Pavlidis, P.
10.1101/320861 — Posted: 2018-05-13 — Discussion: 2022-01-22  GigaScience
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience

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