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406 Reviews — GigaScience — All Subjects

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Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Armstrong, E. E., Taylor, R. W., Prost, S., Blinston, P., van der Meer, E., Madzikanda, H., Mufute, O., Mandisodza, R., Steulpnagel, J., Sillero-Zubiri, C., Petrov, D.

10.1101/195180 — Posted: 2017-09-27 — Discussion: 2022-01-22 GigaScience

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

Nguyen, Q. H., Tellam, R. L., Naval-Sanchez, M., Porto-Neto, L., Barendse, B. W., Reverter-Gomez, T., Hayes, B., Kijas, J., Dalrymple, B. P.

10.1101/143990 — Posted: 2017-06-05 — Discussion: 2022-01-22 GigaScience

BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions

Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.

10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22 GigaScience

Single molecule, full-length transcript sequencing provides insight into the extreme metabolism of ruby-throated hummingbird Archilochus colubris

Workman, R. E., Myrka, A. M., Tseng, E., Wong, G. W., Welch, K. C., Timp, W.

10.1101/117218 — Posted: 2017-03-15 — Discussion: 2022-01-22 GigaScience

Error Correcting Optical Mapping Data

Mukherjee, K., Washimkar, D., Muggli, M. D., Salmela, L., Boucher, C.

10.1101/285692 — Posted: 2018-03-21 — Discussion: 2022-01-22 GigaScience

Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences

Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.

10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22 GigaScience

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria

Thorpe, H. A., Bayliss, S. C., Sheppard, S. K., Feil, E. J.

10.1101/179515 — Posted: 2017-08-22 — Discussion: 2022-01-22 GigaScience

Efficient and accurate detection of splice junctions from RNAseq with Portcullis

Mapleson, D., Venturini, L., Kaithakottil, G., Swarbreck, D.

10.1101/217620 — Posted: 2017-11-10 — Discussion: 2022-01-22 GigaScience

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.

10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22 GigaScience

Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data

Sadedin, S., Ellis, J., Masters, S., Oshlack, A.

10.1101/260927 — Posted: 2018-02-06 — Discussion: 2022-01-22 GigaScience