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157 Reviews — eLife — Genomics

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SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
Breunig, K., Lei, X., Montalbano, M., Guardia, G., Ostadrahimi, S., Alers, V., Kosti, A., Chiou, J., Klein, N., Vinarov, C., Wang, L., Li, M., Song, W., Kraus, W. L. O., Libich, D. S., Tiziani, S., Weintraub, S. T., Galante, P. A. F., Penalva, L. O.
10.1101/2024.03.22.586270 — Posted: 2024-03-25 — Discussion: 2024-12-31  eLife
Deterministic Genetic Barcoding for Multiplexed Behavioral and Single-Cell Transcriptomic Studies
Mendana, J. B., Donovan, M., Gengelbach, L., Auch, B., Garbe, J., Gohl, D.
10.1101/2023.03.29.534817 — Posted: 2023-04-01 — Discussion: 2024-12-30  eLife
Genome-wide analysis of Smad and Schnurri transcription factors in C. elegans demonstrates widespread interaction and a function in collagen secretion
Vora, M., Dietz, J., Wing, Z., Kelly Liu, J., Rongo, C., Savage-Dunn, C.
10.1101/2024.06.05.597576 — Posted: 2024-06-06 — Discussion: 2024-12-30  eLife
Non-linear transcriptional responses to gradual modulation of transcription factor dosage
Domingo, J., Minaeva, M., Morris, J. A., Ziosi, M., Sanjana, N. E., Lappalainen, T.
10.1101/2024.03.01.582837 — Posted: 2024-03-04 — Discussion: 2024-12-17  eLife
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2025-05-29 — Discussion: 2024-12-11  eLife
AIVE: accurate predictions of SARS-CoV-2 infectivity from comprehensive analysis
Park, J., Choi, W., Seong, D. Y., Jeong, S., Lee, J. Y., Park, H. J., Chung, D. S., Yi, K., Kim, U., Yoon, G.-Y., Kim, H., Kim, T., Ko, S., Min, E. J., Cho, H.-S., Cho, N.-H., Hong, D.
10.1101/2024.06.14.598983 — Posted: 2024-06-14 — Discussion: 2024-12-04  eLife
Genome-wide identification of stable RNA-chromatin interactions
Wen, X., Zhong, S.
10.1101/2024.09.04.611281 — Posted: 2024-09-08 — Discussion: 2024-12-04  eLife
Xist RNA binds select autosomal genes and depends on Repeat B to regulate their expression
Yao, S., Jeon, Y., Kesner, B., Lee, J. T.
10.1101/2024.07.23.604772 — Posted: 2024-07-23 — Discussion: 2024-12-04  eLife
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity
Sayeed, K., Parameswaran, S., Beucler, M. J., Edsall, L. E., VonHandorf, A., Crowther, A., Donmez, O. A., Hass, M. R., Richards, S., Forney, C. R., Wright, J., Leong, M. M., Murray-Nerger, L. A., Gewurz, B. E., Kaufman, K. M., Harley, J. B., Zhao, B., Miller, W. E., Kottyan, L. C., Weirauch, M. T.
10.1101/2024.04.12.588762 — Posted: 2024-04-13 — Discussion: 2024-11-27  eLife
DNA methylation insulates genic regions from CTCF loops near nuclear speckles
Roseman, S. A., Siegenfeld, A. P., Lee, C., Lue, N. Z., Waterbury, A. L., Liau, B. B.
10.1101/2023.07.26.550645 — Posted: 2023-07-26 — Discussion: 2024-11-27  eLife

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