bioRxiv/medRxiv TRiP Review Activity

465 Reviews — All Partners — Genomics

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Single-nucleus multiple-organ chromatin accessibility mapping in the rat
Li, R., Yuan, Y., Duan, S., Deng, Q., Ma, W., Liu, C., Gao, P., Lu, L., Liu, C.
10.1101/2024.11.11.622900 — Posted: 2024-11-11 — Discussion: 2026-02-24  GigaScience
Transition of Staphylococcus aureus tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years
Phillips, M. A., Petit, R. A., Weissman, D. B., Read, T. D.
10.1101/2025.09.14.675889 — Posted: 2025-09-15 — Discussion: 2026-02-19  eLife
Draft genome of Trichoderma gamsii strain T035 a promising beneficial fungus in agriculture
Colou, J., Robin, A., Bastide, F., Guillemette, T.
10.1101/2025.09.22.677720 — Posted: 2025-09-23 — Discussion: 2026-02-17  Peer Community In
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2026-02-09  eLife
Nuclear genome profiling of two Mexican orchids of the genus Epidendrum
Alcala-Gaxiola, M. A., Salazar, G. A., Hagsater, E., Flores-Iniestres, M. A., Cabrera, L. I., Avina-Rivera, A. I., Mercado-Ruaro, P., Magallon, S., Mendoza, C. G., Nunez-Ruiz, A., Soldevila, G., Urrutia, A., Meza-Lazaro, R. N.
10.1101/2025.09.17.675454 — Posted: 2025-09-20 — Discussion: 2026-02-07  Review Commons
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2026-02-06  eLife
Stranded short nascent strand sequencing reveals the topology of eukaryotic DNA replication origins in Trypanosoma brucei.
STANOJCIC, S., BARCKMANN, B., MONSIEURS, P., CROBU, L., GEORGE, S., Sterkers, Y.
10.1101/2024.12.03.626629 — Posted: 2024-12-06 — Discussion: 2026-02-04  eLife
Expression-Driven Genetic Dependency Reveals Targets for Precision Medicine
Elmas, A., Layden, H., Ellis, J., Barlett, L., Zhao, X., Kawabata-Iwakawa, R., Obinata, H., Hiebert, S., Huang, K.-l.
10.1101/2024.10.17.618926 — Posted: 2024-10-21 — Discussion: 2026-01-30  GigaScience
Evidence suggests that the SARS-CoV-2 Spike (S) protein may target coiled-coil regions of numerous cytoskeletal and cytoskeleton-associated proteins
Brezellec, P.
10.1101/2025.01.20.633897 — Posted: 2025-01-21 — Discussion: 2026-01-26  Peer Community In
CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development
Ji, L., Wang, A., Sonthalia, S., Naiman, D. Q., Younes, L., Colantuoni, C., Geman, D.
10.1101/2023.04.06.535943 — Posted: 2023-04-07 — Discussion: 2026-01-23  eLife

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