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454 Reviews — All Partners — Genomics

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Mechanistic dissection of GRHL2 and PR transcriptional co-regulation in breast cells
Aarts, M. T., Nordin, A., Cantu, C., van Boxtel, A. L., van Amerongen, R.
10.1101/2025.09.01.673508 — Posted: 2025-09-05 — Discussion: 2025-12-08  Review Commons
Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.
Waltner, O. G., Apfelbaum, A. A., Wrenn, E. D., Bhise, S. S., Kanaan, S. B., Gladden, R. G., Mendoza, M. A., Volden, R., Kronenberg, Z., Patel, A., Dyer, M., Sarthy, J. F., Lawlor, E. R., Furlan, S. N.
10.1101/2025.06.18.660457 — Posted: 2025-06-24 — Discussion: 2025-12-05  eLife
Beyond the transcript: chromatin implications in trans-splicing in Trypanosomatids
Zambrano Siri, R. T., Beati, P., Inchausti, L., Smircich, P., Alonso, G. D., Ocampo, J.
10.1101/2025.07.08.663533 — Posted: 2025-07-11 — Discussion: 2025-12-02  Review Commons
Evolutionary remodeling of non-canonical ORF translation in mammals
Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., Zhang, H.
10.1101/2025.09.16.676541 — Posted: 2025-09-17 — Discussion: 2025-12-02  eLife
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-11-27  eLife
Raman spectra and gene expression correspondences reveal global stoichiometry conservation architecture in cells
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2023-05-10 — Discussion: 2025-11-26  eLife
Non-linear transcriptional responses to gradual modulation of transcription factor dosage
Domingo, J., Minaeva, M., Morris, J. A., Ziosi, M., Sanjana, N. E., Lappalainen, T.
10.1101/2024.03.01.582837 — Posted: 2024-03-04 — Discussion: 2025-11-25  eLife
Heterogeneity of Genetic Sequence within Quasi-species of Influenza Virus Revealed by Single-Molecule Sequencing
Tamao, K., Noji, H., Tabata, K. V.
10.1101/2025.06.19.658006 — Posted: 2025-06-19 — Discussion: 2025-11-24  eLife
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2025-11-10  eLife

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