bioRxiv/medRxiv TRiP Review Activity

436 Reviews — All Partners — Genomics

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Genome reorganization and its functional impact during breast cancer progression
Reed, K. S. M., Fritz, A., Greenyer, H., Heselmeyer-Haddad, K., Frietze, S., Stein, J., Stein, G., Misteli, T.
10.1101/2025.05.14.654144 — Posted: 2025-05-17 — Discussion: 2025-09-10  eLife
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
Chao, K.-H., Mao, A., Liu, A., Salzberg, S. L., Pertea, M.
10.1101/2025.03.20.644351 — Posted: 2025-03-23 — Discussion: 2025-09-09  eLife
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2025-05-29 — Discussion: 2025-09-02  eLife
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-08-27  eLife
A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps
Patel, H. R., Alreja, K., Reis, A. M., Chang, J. K., Chew, Z. A., Jung, H., Hammond, J. M., Deveson, I. W., Ruiz-Herrera, A., Marin-Gual, L., Holleley, C. E., Zhang, X., Lister, N. C., Whiteley, S. L., Xiong, L., Dissanayake, D. S. B., Waters, P. D., Georges, A.
10.1101/2025.05.01.651798 — Posted: 2025-05-02 — Discussion: 2025-08-26  GigaScience
Functional characterization of the disease-associated CCL2 rs1024611G-rs13900T haplotype: The role of the RNA-binding protein HuR
Akhtar, F., Ruiz, J. H., Liu, Y.-G., Resendez, R. G., Feliers, D., Morales, L. D., Diaz-Badillo, A., Lehman, D. M., Arya, R., Alvarenga, J. C. L., Blangero, J., Duggirala, R., Mummidi, S.
10.1101/2023.10.31.564937 — Posted: 2023-11-02 — Discussion: 2025-08-26  eLife
Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
Guang, X., Yang, J., Zhang, S., Guo, F., Li, L., Lian, X., Zeng, T., Cai, C., Liu, F., Li, Z., Hu, Y., Fang, D., He, W., Sahu, S. K., Li, W., Lu, H., Li, Y., Liu, H., Xu, X., Guang, Y., Hu, F., Dong, Y., Wei, T.
10.1101/2024.09.05.611405 — Posted: 2024-09-07 — Discussion: 2025-08-26  GigaScience
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity
Sayeed, K., Parameswaran, S., Beucler, M. J., Edsall, L. E., VonHandorf, A., Crowther, A., Donmez, O. A., Hass, M. R., Richards, S., Forney, C. R., Wright, J., Leong, M. M., Murray-Nerger, L. A., Gewurz, B. E., Kaufman, K. M., Harley, J. B., Zhao, B., Miller, W. E., Kottyan, L. C., Weirauch, M. T.
10.1101/2024.04.12.588762 — Posted: 2024-04-13 — Discussion: 2025-08-26  eLife
A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes
Guo, Q., Pan, Y., Dai, W., Guo, F., Zeng, T., Chen, W., Mi, Y., Zhang, Y., Shi, S., Jiang, W., Cai, H., Wu, B., Zhou, Y., Wang, Y., Yang, C., Shi, X., Yan, X., Chen, J., Cai, C., Yang, J., Xu, X., Gu, Y., Dong, Y., Li, Q.
10.1101/2024.09.05.611321 — Posted: 2024-09-10 — Discussion: 2025-08-26  GigaScience
Single-cell multi-omic analysis reveals principles of transcription-chromatin interaction during embryogenesis
Bhardwaj, V., Griffa, A., Gaza, H. V., Zeller, P., van Oudenaarden, A.
10.1101/2024.09.23.614335 — Posted: 2024-09-24 — Discussion: 2025-08-19  Review Commons

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