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453 Reviews — All Partners — Genomics

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Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience
Machine learning sequence prioritization for cell type-specific enhancer design
Lawler, A. J., Ramamurthy, E., Brown, A. R., Shin, N., Kim, Y., Toong, N., Kaplow, I. M., Wirthlin, M., Zhang, X., Fox, G., Pfenning, A. R.
10.1101/2021.04.15.439984 — Posted: 2021-04-15 — Discussion: 2022-03-14  eLife
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience
The human FLT1 regulatory element directs vascular expression and modulates angiogenesis pathways in vitro and in vivo
Stolper, J., Voges, H. K., See, M., Rahmani Mehdiabadi, N., Chahal, G., Drvodelic, M., Eichenlaub, M., Labonne, T., Schultz, B. G., Hidalgo, A., Centanin, L., Wittbrodt, J., Porrello, E. R., Elliott, D. A., Ramialison, M.
10.1101/2021.03.03.433738 — Posted: 2021-03-06 — Discussion: 2022-03-14  eLife
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Feron, R., Waterhouse, R. M.
10.1101/2021.10.15.464561 — Posted: 2021-10-16 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
High diversity in Delta variant across countries revealed via genome-wide analysis of SARS-CoV-2 beyond the Spike protein
Ghosh, P., Suratekar, R., Niesen, M. J. M., Anand, P., Donadio, G., Soundararajan, V., Venkatakrishnan, A.
10.1101/2021.09.01.458647 — Posted: 2021-09-02 — Discussion: 2022-03-09  EMBO Press
Parent-of-origin effects propagate through networks to shape metabolic traits
Macias-Velasco, J. F., St. Pierre, C. L., Wayhart, J. P., Yin, L., Spears, L., Miranda, M. A., Carson, C., Funai, K., Cheverud, J. M., Semenkovich, C. F., Lawson, H. A.
10.1101/2021.08.10.455860 — Posted: 2021-08-11 — Discussion: 2022-03-07  eLife

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