bioRxiv/medRxiv TRiP Review Activity

436 Reviews — All Partners — Genomics

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A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
High diversity in Delta variant across countries revealed via genome-wide analysis of SARS-CoV-2 beyond the Spike protein
Ghosh, P., Suratekar, R., Niesen, M. J. M., Anand, P., Donadio, G., Soundararajan, V., Venkatakrishnan, A.
10.1101/2021.09.01.458647 — Posted: 2021-09-02 — Discussion: 2022-03-09  EMBO Press
Parent-of-origin effects propagate through networks to shape metabolic traits
Macias-Velasco, J. F., St. Pierre, C. L., Wayhart, J. P., Yin, L., Spears, L., Miranda, M. A., Carson, C., Funai, K., Cheverud, J. M., Semenkovich, C. F., Lawson, H. A.
10.1101/2021.08.10.455860 — Posted: 2021-08-11 — Discussion: 2022-03-07  eLife
Epigenetic machinery is functionally conserved in cephalopods
Macchi, F., Edsinger, E., Sadler, K. C.
10.1101/2021.11.18.469068 — Posted: 2021-11-19 — Discussion: 2022-03-04  Review Commons
Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells
Barnada, S. M., Isopi, A., Tejada-Martinez, D., Goubert, C., Patoori, S., Pagliaroli, L., Tracewell, M., Trizzino, M.
10.1101/2022.01.10.475682 — Posted: 2022-01-10 — Discussion: 2022-03-01  Review Commons
Robust and annotation-free analysis of isoform variation using short-read scRNA-seq data
Benegas, G., Fischer, J., Song, Y. S.
10.1101/2021.04.27.441683 — Posted: 2021-04-27 — Discussion: 2022-02-24  eLife
Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species
Bickhart, D. M., Koch, L. M., Smith, T. P. L., Riday, H., Sullivan, M. L.
10.1101/2022.01.06.475143 — Posted: 2022-01-06 — Discussion: 2022-02-20  Gigabyte
A trans-acting long non-coding RNA represses flowering in Arabidopsis
Jin, Y., Ivanov, M., Dittrich, A. N., Nelson, A., Marquardt, S.
10.1101/2021.11.15.468639 — Posted: 2021-11-16 — Discussion: 2022-02-14  Review Commons
Identification of blood autosomal cis-expression quantitative trait methylation (cis-eQTMs) in children
Ruiz-Arenas, C., Hernandez-Ferrer, C., Vives-Usano, M., Mari, S., Quintela, I., Mason, D., Cadiou, S., Casas, M., Andrusaityte, S., Gutzkow, K. B., Vafeiadi, M., Wright, J., Lepeule, J., Grazuleviciene, R., Chatzi, L., Carracedo, a., Estivill, X., Marti, E., Escaramis, G., Vrijheid, M., Gonzalez, J. R., Bustamante, M.
10.1101/2020.11.05.368076 — Posted: 2020-11-05 — Discussion: 2022-02-11  eLife
A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
Machado, A., Gomes-dos-Santos, A., Fonseca, M., Fonseca, R. d., Verissimo, A., Felicio, M., Capela, R., Alves, N., Santos, M., Salvador-Caramelo, F., Domingues, M., Ruivo, R., Froufe, E., Castro, F.
10.1101/2021.11.19.468211 — Posted: 2021-11-20 — Discussion: 2022-02-10  Gigabyte

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