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475 Reviews — All Partners — Genomics

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Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections
Giulieri, S. G., Guerillot, R., Duchene, S., Hachani, A., Daniel, D., Seemann, T., Davis, J. S., Tong, S. Y., Young, B. C., Wilson, D. J., Stinear, T. P., Howden, B. P.
10.1101/2022.02.11.480068 — Posted: 2022-02-12 — Discussion: 2022-05-16  eLife
GENESPACE: syntenic pan-genome annotations for eukaryotes
Lovell, J. T., Sreedasyam, A., Schranz, M. E., Wilson, M. A., Carlson, J. W., Harkess, A., Emms, D., Goodstein, D. M., Schmutz, J.
10.1101/2022.03.09.483468 — Posted: 2022-03-11 — Discussion: 2022-05-15  eLife
Transcriptome-wide Association Study and eQTL colocalization identify potentially causal genes responsible for bone mineral density GWAS associations
Al-Barghouthi, B. M., Rosenow, W. T., Du, K.-P., Heo, J., Maynard, R., Mesner, L., Calabrese, G., Nakasone, A., Senwar, B., Gerstenfeld, L., Ferguson, V., Ackert-Bicknell, C., Morgan, E., Brautigan, D. L., Farber, C. R.
10.1101/2021.10.12.464046 — Posted: 2021-10-13 — Discussion: 2022-05-12  eLife
Comparative transcriptome analysis of human and murine choroidal neovascularization identifies fibroblast growth factor inducible-14 as phylogenetically conserved mediator of neovascular age-related macular degeneration
Wolf, J., Schlecht, A., Rosmus, D.-D., Boneva, S., Agostini, H., Schlunck, G., Wieghofer, P., Lange, C.
10.1101/2021.05.10.443381 — Posted: 2021-05-11 — Discussion: 2022-05-04  eLife
Genome Assembly of the Roundjaw Bonefish (Albula glossodonta), a Vulnerable Circumtropical Sportfish
Pickett, B. D., Talma, S., Glass, J. R., Ence, D., Cowley, P. D., Ridge, P. G., Kauwe, J. S.
10.1101/2021.09.10.458299 — Posted: 2021-09-11 — Discussion: 2022-04-24  Gigabyte
Unique features of transcription termination and initiation at closely spaced tandem human genes
Nissani, N., Ulitsky, I.
10.1101/2021.09.10.459726 — Posted: 2021-09-11 — Discussion: 2022-04-23  EMBO Press
Intensive Single Cell Analysis Reveals Immune Cell Diversity among Healthy Individuals
Kashima, Y., Kaneko, K., Reteng, P., Yoshitake, N., Runtuwene, L. R., Nagasawa, S., Onishi, M., Seki, M., Suzuki, A., Sugano, S., Sakata-Yanagimoto, M., Imai, Y., Nakayama-Hosoya, K., Kawana-Tachikawa, A., Mizutani, T., Suzuki, Y.
10.1101/2021.10.18.464926 — Posted: 2021-10-20 — Discussion: 2022-04-22  EMBO Press
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation
Wanigasuriya, I., Kinkel, S. A., Beck, T., Roper, E. A., Breslin, K., Lee, H. J., Keniry, A., Ritchie, M. E., Blewitt, M. E., Gouil, Q.
10.1101/2021.10.21.465360 — Posted: 2021-10-21 — Discussion: 2022-04-13  eLife
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar
Qi, W., Lim, Y.-W., Patrignani, A., Schlaepfer, P., Bratus-Neuenschwander, A., Grueter, S., Chanez, C., Rodde, N., Prat, E., Vautrin, S., Fustier, M.-A., Pratas, D., Schlapbach, R., Gruissem, W.
10.1101/2021.11.16.468774 — Posted: 2021-11-19 — Discussion: 2022-04-08  GigaScience
Oct4 primarily controls enhancer activity rather than accessibility
Xiong, L., Tolen, E. A., Choi, J., Caizzi, L., Adachi, K., Lidschreiber, M., Cramer, P., Schoeler, H. R.
10.1101/2021.06.28.450119 — Posted: 2021-06-28 — Discussion: 2022-03-25  eLife

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