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436 Reviews — All Partners — Genomics

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Oct4 primarily controls enhancer activity rather than accessibility
Xiong, L., Tolen, E. A., Choi, J., Caizzi, L., Adachi, K., Lidschreiber, M., Cramer, P., Schoeler, H. R.
10.1101/2021.06.28.450119 — Posted: 2021-06-28 — Discussion: 2022-03-25  eLife
Chromosomal rearrangements but no change of genes and transposable elements repertoires in an invasive forest-pathogenic fungus
Demene, A., Laurent, B., Cros-Arteil, S., Boury, C., Dutech, C.
10.1101/2021.03.09.434572 — Posted: 2021-03-10 — Discussion: 2022-03-24  Peer Community In
The human FLT1 regulatory element directs vascular expression and modulates angiogenesis pathways in vitro and in vivo
Stolper, J., Voges, H. K., See, M., Rahmani Mehdiabadi, N., Chahal, G., Drvodelic, M., Eichenlaub, M., Labonne, T., Schultz, B. G., Hidalgo, A., Centanin, L., Wittbrodt, J., Porrello, E. R., Elliott, D. A., Ramialison, M.
10.1101/2021.03.03.433738 — Posted: 2021-03-06 — Discussion: 2022-03-14  eLife
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Feron, R., Waterhouse, R. M.
10.1101/2021.10.15.464561 — Posted: 2021-10-16 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience

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