bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals
Zhu, Y., Liao, X., Han, T., Chen, J.- Y., He, C., Lu, Z.
10.1101/2022.06.27.497859 — Posted: 2022-06-30 — Discussion: 2023-03-24  GigaScience
What the Phage: A scalable workflow for the identification and analysis of phage sequences
Marquet, M., Hölzer, M., Pletz, M. W., Viehweger, A., Makarewicz, O., Ehricht, R., Brandt, C.
10.1101/2020.07.24.219899 — Posted: 2020-07-25 — Discussion: 2023-03-24  GigaScience
Making Common Fund data more Findable: Catalyzing a Data Ecosystem
Charbonneau, A. L., Brady, A., Brown, C. T., Sansone, S.-A., Ma'ayan, A., Wagner, R., Carter, R., Harris, R. M., Gingrich, A., Lim, M. C. W., Munro, J. B., Clarke, D. J. B., Creasy, H. H., Rocca-Serra, P., Jeon, M., Liming, R. L., Schuler, R. E., Romano, C., Chard, K., Giglio, M., Nadendla, S., Hodges, T. K., Mandal, M., Canchi, S., Waldrop, A., White, O.
10.1101/2021.11.05.467504 — Posted: 2021-11-08 — Discussion: 2023-03-24  GigaScience
Interrogating the Precancerous Evolution of Pathway Dysfunction in Lung Squamous Cell Carcinoma Using XTABLE
Roberts, M., Ogden, J., Hossain, A. S. M. M., Kerr, A., Dive, C., Beane, J., Lopez-Garcia, C.
10.1101/2022.05.06.490640 — Posted: 2022-05-06 — Discussion: 2023-03-14  eLife
New algorithms for accurate and efficient de-novo genome assembly from long DNA sequencing reads
Gonzalez-Garcia, L. N., Guevara-Barrientos, D., Lozano-Arce, D., Gil, J., Diaz-Riano, J., Duarte, E., Andrade, G., Bojaca, J. C., Hoyos, M. C., Chavarro, C., Guayazan, N., Chica, L. A., Buitrago Acosta, M. C., Bautista, E., Trujillo, M., Duitama, J.
10.1101/2022.08.30.505891 — Posted: 2022-09-01 — Discussion: 2023-03-09  EMBO Press
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows
Suetake, H., Fukusato, T., Igarashi, T., Ohta, T.
10.1101/2022.07.08.499265 — Posted: 2022-07-10 — Discussion: 2023-03-05  GigaScience
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
Sarwal, V., Brito, J., Mangul, S., Koslicki, D. J.
10.1101/2022.04.28.489926 — Posted: 2022-04-29 — Discussion: 2023-03-05  GigaScience
Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data
Lanciano, T., Savino, A., Porcu, F., Cittaro, D., Bonchi, F., Provero, P.
10.1101/2022.07.26.501547 — Posted: 2022-07-27 — Discussion: 2023-03-05  GigaScience
Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation
Avila Cartes, J., Anand, S., Ciccolella, S., Bonizzoni, P., Della Vedova, G.
10.1101/2022.06.13.495912 — Posted: 2022-06-13 — Discussion: 2023-03-04  GigaScience
xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments
Farek, J., Hughes, D., Mansfield, A., Krasheninina, O., Nasser, W., Sedlazeck, F. J., Khan, Z., Venner, E., Metcalf, G., Boerwinkle, E., Muzny, D. M., Gibbs, R. A., Salerno, W.
10.1101/295071 — Posted: 2018-04-05 — Discussion: 2023-03-04  GigaScience

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