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179 Reviews — eLife — Genomics

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GENESPACE: syntenic pan-genome annotations for eukaryotes
Lovell, J. T., Sreedasyam, A., Schranz, M. E., Wilson, M. A., Carlson, J. W., Harkess, A., Emms, D., Goodstein, D. M., Schmutz, J.
10.1101/2022.03.09.483468 — Posted: 2022-03-11 — Discussion: 2022-05-15  eLife
Transcriptome-wide Association Study and eQTL colocalization identify potentially causal genes responsible for bone mineral density GWAS associations
Al-Barghouthi, B. M., Rosenow, W. T., Du, K.-P., Heo, J., Maynard, R., Mesner, L., Calabrese, G., Nakasone, A., Senwar, B., Gerstenfeld, L., Ferguson, V., Ackert-Bicknell, C., Morgan, E., Brautigan, D. L., Farber, C. R.
10.1101/2021.10.12.464046 — Posted: 2021-10-13 — Discussion: 2022-05-12  eLife
Comparative transcriptome analysis of human and murine choroidal neovascularization identifies fibroblast growth factor inducible-14 as phylogenetically conserved mediator of neovascular age-related macular degeneration
Wolf, J., Schlecht, A., Rosmus, D.-D., Boneva, S., Agostini, H., Schlunck, G., Wieghofer, P., Lange, C.
10.1101/2021.05.10.443381 — Posted: 2021-05-11 — Discussion: 2022-05-04  eLife
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation
Wanigasuriya, I., Kinkel, S. A., Beck, T., Roper, E. A., Breslin, K., Lee, H. J., Keniry, A., Ritchie, M. E., Blewitt, M. E., Gouil, Q.
10.1101/2021.10.21.465360 — Posted: 2021-10-21 — Discussion: 2022-04-13  eLife
Oct4 primarily controls enhancer activity rather than accessibility
Xiong, L., Tolen, E. A., Choi, J., Caizzi, L., Adachi, K., Lidschreiber, M., Cramer, P., Schoeler, H. R.
10.1101/2021.06.28.450119 — Posted: 2021-06-28 — Discussion: 2022-03-25  eLife
The human FLT1 regulatory element directs vascular expression and modulates angiogenesis pathways in vitro and in vivo
Stolper, J., Voges, H. K., See, M., Rahmani Mehdiabadi, N., Chahal, G., Drvodelic, M., Eichenlaub, M., Labonne, T., Schultz, B. G., Hidalgo, A., Centanin, L., Wittbrodt, J., Porrello, E. R., Elliott, D. A., Ramialison, M.
10.1101/2021.03.03.433738 — Posted: 2021-03-06 — Discussion: 2022-03-14  eLife
Machine learning sequence prioritization for cell type-specific enhancer design
Lawler, A. J., Ramamurthy, E., Brown, A. R., Shin, N., Kim, Y., Toong, N., Kaplow, I. M., Wirthlin, M., Zhang, X., Fox, G., Pfenning, A. R.
10.1101/2021.04.15.439984 — Posted: 2021-04-15 — Discussion: 2022-03-14  eLife
Parent-of-origin effects propagate through networks to shape metabolic traits
Macias-Velasco, J. F., St. Pierre, C. L., Wayhart, J. P., Yin, L., Spears, L., Miranda, M. A., Carson, C., Funai, K., Cheverud, J. M., Semenkovich, C. F., Lawson, H. A.
10.1101/2021.08.10.455860 — Posted: 2021-08-11 — Discussion: 2022-03-07  eLife
Robust and annotation-free analysis of isoform variation using short-read scRNA-seq data
Benegas, G., Fischer, J., Song, Y. S.
10.1101/2021.04.27.441683 — Posted: 2021-04-27 — Discussion: 2022-02-24  eLife
Identification of blood autosomal cis-expression quantitative trait methylation (cis-eQTMs) in children
Ruiz-Arenas, C., Hernandez-Ferrer, C., Vives-Usano, M., Mari, S., Quintela, I., Mason, D., Cadiou, S., Casas, M., Andrusaityte, S., Gutzkow, K. B., Vafeiadi, M., Wright, J., Lepeule, J., Grazuleviciene, R., Chatzi, L., Carracedo, a., Estivill, X., Marti, E., Escaramis, G., Vrijheid, M., Gonzalez, J. R., Bustamante, M.
10.1101/2020.11.05.368076 — Posted: 2020-11-05 — Discussion: 2022-02-11  eLife

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