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173 Reviews — eLife — Genomics

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High-resolution mapping of DNA alkylation damage and base excision repair at yeast transcription factor binding sites
Mao, P., Duan, M., Sivapragasam, S., Antony, J. S., Ulibarri, J., Hinz, J. M., Poon, G. M. K., Wyrick, J. J.
10.1101/2021.09.24.461700 — Posted: 2021-09-24 — Discussion: 2021-12-20  eLife
Quantitative prediction of variant effects on alternative splicing using endogenous pre-messenger RNA structure probing
Kumar, J., Lackey, L., Waldern, J. M., Dey, A., Mathews, D., Laederach, A.
10.1101/2021.09.13.460117 — Posted: 2021-09-13 — Discussion: 2021-12-14  eLife
Genome-wide association study in the pseudocereal quinoa reveals selection pattern typical for crops with a short breeding history
Patirange, D. S. R., Rey, E., Emrani, N., Wellman, G., Schmid, K., Schmoeckel, S. M., Tester, M., Jung, C.
10.1101/2020.12.03.410050 — Posted: 2020-12-03 — Discussion: 2021-12-01  eLife
Higher-order chromatin organization defines PR and PAX2 binding to regulate endometrial cancer cell gene expression
La Greca, A., Bellora, N., Le Dily, F., Jara, R., Quilez, J., Merino, G., Fresno, C., Tarifa Rieschle, I., Vallejo, G., Vicent, G., Fernandez, E., Beato, M., Saragüeta, P.
10.1101/739466 — Posted: 2019-08-20 — Discussion: 2021-11-23  eLife
Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites and Chromatin
Chan, M., Yuan, H., Soifer, I., Maile, T. M., Wang, R. Y., Ireland, A., O'Brien, J., Goudeau, J., Chan, L., Vijay, T., Freund, A., Kenyon, C., Bennett, B., McAllister, F., Kelley, D. R., Roy, M., Cohen, R. L., Levinson, A. D., Botstein, D., Hendrickson, D.
10.1101/2021.05.03.442497 — Posted: 2021-05-04 — Discussion: 2021-11-17  eLife
A single synonymous nucleotide change impacts the male-killing phenotype of prophage WO gene wmk
Perlmutter, J., Bordenstein, S. R., Meyers, J. E.
10.1101/2021.03.11.434916 — Posted: 2021-03-12 — Discussion: 2021-10-27  eLife
Mitochondrial genome sequencing of marine leukemias reveals cancer contagion between clam species in the Seas of Southern Europe
Garcia-Souto, D., Bruzos, A. L., Diaz-Costas, S., Rocha, S., Pequeno, A., Roman-Lewis, C. F., Alonso, J., Rodriguez, R., Costas, D., Rodriguez-Castro, J., Villanueva, A., Silva, L., Valencia, J. M., Annona, G., Tarallo, A., Ricardo, F., Bratos Cetinic, A., Posada, D., Pasantes, J. J., TUBIO, J. M.
10.1101/2021.03.10.434714 — Posted: 2021-03-10 — Discussion: 2021-10-27  eLife
A Test of the Pioneer Factor Hypothesis
Hansen, J. L., Cohen, B. A.
10.1101/2021.08.17.456650 — Posted: 2021-08-18 — Discussion: 2021-10-13  eLife
Mechanisms regulating interindividual epigenetic variability at transposable elements
Costello, K. R., Leung, A., Trac, C., Lee, M., Basam, M., Pospisilik, J. A., Schones, D.
10.1101/2021.06.01.446659 — Posted: 2021-06-02 — Discussion: 2021-10-04  eLife
Remote immune processes revealed by immune-derived circulating cell-free DNA
Fox-Fisher, I., Piyanzin, S., Klochendler, A., Ochana, B. L., Magenheim, J., Peretz, A., Loyfer, N., Moss, J., Cohen, D., Drori, Y., Friedman, N., Mandelboim, M., Rothenberg, M. E., Caldwell, J. M., Rochman, M., Jamshidi, A., Cann, G., Lavi, D., Kaplan, T., Glaser, B., Shemer, R., Dor, Y.
10.1101/2021.09.13.460029 — Posted: 2021-09-15 — Discussion: 2021-09-16  eLife

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