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173 Reviews — eLife — Genomics

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Re-investigation of classic T cell subsets and identification of novel cell subpopulations by single-cell RNA sequencing
Wang, X., Shen, X., Chen, S., Liu, H., Hong, N., Chen, X., Jin, W.
10.1101/2021.02.11.430754 — Posted: 2021-02-12 — Discussion: 2022-06-25  eLife
Ecology, more than antibiotics consumption, is the major predictor for the global distribution of aminoglycoside-modifying enzymes
Pradier, L., Bedhomme, S.
10.1101/2022.01.07.475340 — Posted: 2022-01-07 — Discussion: 2022-06-23  eLife
Activity-induced gene expression and long-range enhancer-promoter contacts in cohesin-deficient neurons
Calderon, L., Weiss, F. D., Beagan, J. A., Oliveira, M. S., Wang, Y.-F., Carroll, T., Dharmalingam, G., Gong, W., Tossell, K., de Paola, V., Whilding, C., Ungless, M. A., Fisher, A. G., Phillips-Cremins, J. E., Merkenschlager, M.
10.1101/2021.02.24.432639 — Posted: 2021-02-24 — Discussion: 2022-05-27  eLife
Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections
Giulieri, S. G., Guerillot, R., Duchene, S., Hachani, A., Daniel, D., Seemann, T., Davis, J. S., Tong, S. Y., Young, B. C., Wilson, D. J., Stinear, T. P., Howden, B. P.
10.1101/2022.02.11.480068 — Posted: 2022-02-12 — Discussion: 2022-05-16  eLife
GENESPACE: syntenic pan-genome annotations for eukaryotes
Lovell, J. T., Sreedasyam, A., Schranz, M. E., Wilson, M. A., Carlson, J. W., Harkess, A., Emms, D., Goodstein, D. M., Schmutz, J.
10.1101/2022.03.09.483468 — Posted: 2022-03-11 — Discussion: 2022-05-15  eLife
Transcriptome-wide Association Study and eQTL colocalization identify potentially causal genes responsible for bone mineral density GWAS associations
Al-Barghouthi, B. M., Rosenow, W. T., Du, K.-P., Heo, J., Maynard, R., Mesner, L., Calabrese, G., Nakasone, A., Senwar, B., Gerstenfeld, L., Ferguson, V., Ackert-Bicknell, C., Morgan, E., Brautigan, D. L., Farber, C. R.
10.1101/2021.10.12.464046 — Posted: 2021-10-13 — Discussion: 2022-05-12  eLife
Comparative transcriptome analysis of human and murine choroidal neovascularization identifies fibroblast growth factor inducible-14 as phylogenetically conserved mediator of neovascular age-related macular degeneration
Wolf, J., Schlecht, A., Rosmus, D.-D., Boneva, S., Agostini, H., Schlunck, G., Wieghofer, P., Lange, C.
10.1101/2021.05.10.443381 — Posted: 2021-05-11 — Discussion: 2022-05-04  eLife
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation
Wanigasuriya, I., Kinkel, S. A., Beck, T., Roper, E. A., Breslin, K., Lee, H. J., Keniry, A., Ritchie, M. E., Blewitt, M. E., Gouil, Q.
10.1101/2021.10.21.465360 — Posted: 2021-10-21 — Discussion: 2022-04-13  eLife
Oct4 primarily controls enhancer activity rather than accessibility
Xiong, L., Tolen, E. A., Choi, J., Caizzi, L., Adachi, K., Lidschreiber, M., Cramer, P., Schoeler, H. R.
10.1101/2021.06.28.450119 — Posted: 2021-06-28 — Discussion: 2022-03-25  eLife
The human FLT1 regulatory element directs vascular expression and modulates angiogenesis pathways in vitro and in vivo
Stolper, J., Voges, H. K., See, M., Rahmani Mehdiabadi, N., Chahal, G., Drvodelic, M., Eichenlaub, M., Labonne, T., Schultz, B. G., Hidalgo, A., Centanin, L., Wittbrodt, J., Porrello, E. R., Elliott, D. A., Ramialison, M.
10.1101/2021.03.03.433738 — Posted: 2021-03-06 — Discussion: 2022-03-14  eLife

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