bioRxiv/medRxiv TRiP Review Activity

169 Reviews — eLife — Genomics

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Non-invasive real-time genomic monitoring of the critically endangered kakapo
Urban, L., Miller, A. K., Eason, D., Vercoe, D., Shaffer, M., Wilkinson, S. P., Jeunen, G.-J., Gemmell, N. J., Digby, A.
10.1101/2022.11.14.516431 — Posted: 2022-11-17 — Discussion: 2023-02-16  eLife
Comprehensive characterization of the transcriptional response to COVID-19 in multiple organs reveals shared signatures across tissues
The COVID Tissue Atlas Consortium, , Granados, A. A., Bucher, S., Agrawal, A., Song, H., Chen, A. T., Peng, T., Neff, N., Pisco, A. O., Huang, F., Wang, B.
10.1101/2022.05.31.493925 — Posted: 2022-05-31 — Discussion: 2023-02-15  eLife
Multi-tissue landscape of somatic mtDNA mutations indicates tissue specific accumulation and removal in aging
Sanchez-Contreras, M., Sweetwyne, M. T., Tsantilas, K. A., Whitson, J. A., Campbell, M. D., Kohrn, B. F., Kim, H.-J., Fredrickson, J., Nguyen, M. M., Hurley, J. B., Marcinek, D. J., Rabinovitch, P. S., Kennedy, S. R.
10.1101/2022.08.30.505884 — Posted: 2022-09-01 — Discussion: 2023-02-10  eLife
Activity-based CRISPR Scanning Uncovers Allostery in DNA Methylation Maintenance Machinery
Ngan, K. C., Hoenig, S. M., Gosavi, P. M., Tanner, D. A., Lue, N. Z., Garcia, E. M., Lee, C., Liau, B. B.
10.1101/2022.05.14.491958 — Posted: 2022-05-15 — Discussion: 2023-01-02  eLife
Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis
Naderi, S., Chen, P., Murall, C. L., Poujol, R., Kraemer, S. A., Pickering, B. S., Sagan, S. M., Shapiro, B. J.
10.1101/2022.06.02.494559 — Posted: 2022-06-06 — Discussion: 2022-12-22  eLife
Discovery and characterization of LNCSOX17 as an essential regulator in human endoderm formation
Landshammer, A., Bolondi, A., Kretzmer, H., Much, C., Buschow, R., Rose, A., Wu, H.-J., Mackowiak, S., Braendl, B., Giesselmann, P., Tornisiello, R., Parsi, K. M., Huey, J., Mielke, T., Meierhofer, D., Maehr, R., Hnisz, D., Michor, F., Rinn, J. L., Meissner, A.
10.1101/2022.09.12.507139 — Posted: 2022-09-13 — Discussion: 2022-12-16  eLife
Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors
Replogle, J. M., Bonnar, J. L., Pogson, A. N., Liem, C. R., Maier, N. K., Ding, Y., Russell, B. J., Wang, X., Leng, K., Guna, A., Norman, T. M., Pak, R. A., Ramos, D. M., Ward, M. E., Gilbert, L. A., Kampmann, M., Weissman, J. S., Jost, M.
10.1101/2022.07.13.499814 — Posted: 2022-07-13 — Discussion: 2022-12-08  eLife
Future COVID-19 surges prediction based on SARS-CoV-2 mutations surveillance
Najar, F., Linde, E., Murphy, C., Borin, V., Wang, H., Haider, S., Agarwal, P.
10.1101/2022.09.05.506640 — Posted: 2022-09-07 — Discussion: 2022-11-28  eLife
Comprehensive re-analysis of hairpin RNAs in fungi reveals ancestral links
Johnson, N. R., Larrondo, L. F., Alvarez, J. M., Vidal, E. A.
10.1101/2022.09.15.508153 — Posted: 2022-09-16 — Discussion: 2022-11-28  eLife
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns
Soerensen, S. G., Shrikhande, A., Poulsgaard, G. A., Christensen, M. H., Bertl, J., Hoffmann, E. R., Pedersen, J. S.
10.1101/2022.01.31.478445 — Posted: 2022-02-03 — Discussion: 2022-11-18  eLife

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