bioRxiv/medRxiv TRiP Review Activity

418 Reviews — GigaScience — All Subjects

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RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits
Tsang, I., Percival-Alwyn, L., Rawsthorne, S., Cockram, J., Leigh, F., Atkinson, J.
10.1101/2025.07.14.664697 — Posted: 2025-07-18 — Discussion: 2025-11-28  GigaScience
GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Hartmann, U., Shaham, E., Nathan, D., Blech, I., Zeevi, D.
10.1101/2025.02.16.638517 — Posted: 2025-02-20 — Discussion: 2025-10-30  GigaScience
Improving the Reliability and Quality of Nextflow Pipelines with nf-test
Forer, L., Schoenherr, S.
10.1101/2024.05.25.595877 — Posted: 2024-05-30 — Discussion: 2025-10-30  GigaScience
On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species
Howard, C., Denton, A., Jackson, B., Bates, A., Jay, J., Yatsenko, H., Raman, P. S., Thomas, A., Oatley, G., do Amaral, R. V., Göktan, Z. E., Gomez, J. P. N., Clayton Lucey, I., Sinclair, E., Quail, M. A., Blaxter, M., Howe, K., Lawniczak, M.
10.1101/2025.04.11.648334 — Posted: 2025-04-11 — Discussion: 2025-10-30  GigaScience
The enduring advantages of the SLOW5 file format for raw nanopore sequencing data
Gamaarachchi, H., Jenner, S., Samarakoon, H., Ferguson, J. M., Deveson, I. W.
10.1101/2025.06.30.662478 — Posted: 2025-07-04 — Discussion: 2025-10-30  GigaScience
Reproducible processing of TCGA regulatory networks
Fanfani, V., Shutta, K. H., Mandros, P., Fischer, J., Saha, E., Micheletti, S., Chen, C., Ben Guebila, M., Lopes-Ramos, C. M., Quackenbush, J.
10.1101/2024.11.05.622163 — Posted: 2024-11-07 — Discussion: 2025-10-30  GigaScience
Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes
Bagci, C., Negri, T., Buena-Atienza, E., Gross, C., Ossowski, S., Ziemert, N.
10.1101/2025.05.28.656579 — Posted: 2025-05-28 — Discussion: 2025-10-30  GigaScience

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