bioRxiv/medRxiv TRiP Review Activity

439 Reviews — GigaScience — All Subjects

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Characterising a species-rich and understudied tropical insect fauna using DNA barcoding

Hemprich-Bennett, D. R., Donkor, E., Adams, B., Acquaah, N. A., Ofori, E. D., Anie-Amoah, S., Bailey, A., Godfray, H. C. J., Lewis, O. T., Aboagye-Antwi, F., Hackett, T. D.

10.1101/2025.09.30.675770 — Posted: 2025-10-01 — Discussion: 2026-04-10 GigaScience

MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction

Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.

10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10 GigaScience

Patterns of aDNA Damage Through Time end Environments, lessons from herbarium specimens

Porrelli, S., Fornasiero, A., Le, P. H., Yin, W., Navarrete Rodriguez, M., Mohammed, N., Himmelbach, A., Clarke, A. C., Stein, N., Kersey, P. J., Wing, R. A., Gutaker, R. M.

10.1101/2025.10.26.684600 — Posted: 2025-10-26 — Discussion: 2026-04-10 GigaScience

Sex Chromosome Turnover and Structural Interspecific Genome Divergence Shapes Meiotic Outcomes in Hybridizing Cobitis

Schlebusch, S., Trifonov, V., Halenkova, Z., Klianitskaya, M., Dedukh, D., Ruiz Herrera, A., Alvarez Gonzalez, L., Pujol Infantes, G., Hribova, E., Andjel, L., Bartos, O., Pajer, P., Tichopad, T., Kulik, D., Kotusz, J., Dolezalkova-Kastankova, M., Bohne, A., Marta, A., Horna, P., Reifova, R., Guiguen, Y., Paces, J., Janko, K.

10.1101/2025.04.01.646337 — Posted: 2025-04-06 — Discussion: 2026-04-10 GigaScience

scDenorm: a denormalisation tool for integrating single-cell transcriptomics data

Huang, Y., Pournara, A. V., Ao, Y., Yang, L., Zhang, H., Zhang, Y., Liu, S., Brazma, A., Papatheodorou, I., Yang, X., Shi, M., Miao, Z.

10.1101/2025.05.10.653289 — Posted: 2025-05-15 — Discussion: 2026-04-09 GigaScience

MIReVTD, a Minimum Information Standard for Reporting Vector Trait Data

Ryan, S. J., Huxley, P., Lippi, C., Pawar, S., Cator, L., Rund, S. S. C., Johnson, L. R.

10.1101/2025.01.27.634769 — Posted: 2025-01-28 — Discussion: 2026-03-20 GigaScience

Comparative analysis of eccDNA and circRNA tools shows increased accuracy of tool combination

Zabala, A., Ascension, A. M., Prada-Luengo, I., Otaegui, D.

10.1101/2025.07.14.664708 — Posted: 2025-07-18 — Discussion: 2026-03-20 GigaScience

Graph-Regularized Optimal Transport for Single-Cell Data Integration

Wang, Z., Zhan, Q., Shen, L.

10.1101/2024.10.30.621072 — Posted: 2024-11-02 — Discussion: 2026-02-24 GigaScience

Enhanced semantic classification of microbiome sample origins using Large Language Models (LLMs)

Gaio, D., Tackmann, J., Perez-Molphe-Montoya, E., Napflin, N., Patsch, D., Malfertheiner, L., von Mering, C.

10.1101/2025.04.24.650461 — Posted: 2025-04-27 — Discussion: 2026-02-24 GigaScience

Improved genome assembly of whale shark, the world's biggest fish: revealing "chromocline" in intragenomic heterogeneity

Kawaguchi, Y. W., Matsumoto, R., Kuraku, S.

10.1101/2025.09.06.674125 — Posted: 2025-09-10 — Discussion: 2026-02-24 GigaScience