bioRxiv/medRxiv TRiP Review Activity

512 Reviews — All Partners — Bioinformatics

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Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework
Rusakovich, A., CORRE, S., Cadieu, E., Fraboulet, R.-M., Galibert, M.-D., Derrien, T., Blum, Y.
10.1101/2025.04.17.649290 — Posted: 2025-04-23 — Discussion: 2026-03-04  Peer Community In
Graph-Regularized Optimal Transport for Single-Cell Data Integration
Wang, Z., Zhan, Q., Shen, L.
10.1101/2024.10.30.621072 — Posted: 2024-11-02 — Discussion: 2026-02-24  GigaScience
Enhanced semantic classification of microbiome sample origins using Large Language Models (LLMs)
Gaio, D., Tackmann, J., Perez-Molphe-Montoya, E., Napflin, N., Patsch, D., Malfertheiner, L., von Mering, C.
10.1101/2025.04.24.650461 — Posted: 2025-04-27 — Discussion: 2026-02-24  GigaScience
A translational transcriptomic signature of vaccine reactogenicity for the evaluation of novel formulations
Becker, J., Roelens, M., Reynaud, K., Beloeil, L.
10.1101/2025.11.20.689650 — Posted: 2025-11-25 — Discussion: 2026-02-19  eLife
End-to-end proteogenomics for discovery of cryptic and non-canonical cancer proteoforms using long-read transcriptomics and multi-dimensional proteomics
Kulej, K., Preska Steinberg, A., Zhang, J., Casalena, G., Havasov, E., Shah, S. P., McPherson, A., Kentsis, A.
10.1101/2025.08.23.671943 — Posted: 2025-08-28 — Discussion: 2026-02-11  eLife
Leveraging Disease Association Degree for High-Accuracy MicroRNA Target Prediction
Chen, B.
10.1101/2025.11.06.686936 — Posted: 2025-11-11 — Discussion: 2026-02-09  eLife
nf-core/proteinfamilies: A scalable pipeline for the generation of protein families
Karatzas, E., Beracochea, M., Baltoumas, F. A., Aplakidou, E., Richardson, L., Fellows Yates, J. A., Lundin, D., nf-core community, , Buluc, A., Kyrpides, N., Georgakopoulos-Soares, I., Pavlopoulos, G. A., Finn, R. D.
10.1101/2025.08.12.670010 — Posted: 2025-08-16 — Discussion: 2026-01-29  GigaScience
SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets
Seal, S., Neelon, B.
10.1101/2025.03.29.646124 — Posted: 2025-04-03 — Discussion: 2026-01-29  GigaScience
Federated Knowledge Retrieval Elevates Large Language Model Performance on Biomedical Benchmarks
Joy, J., Su, A. I.
10.1101/2025.08.01.668022 — Posted: 2025-08-02 — Discussion: 2026-01-29  GigaScience
The Hok bacterial toxin: diversity, toxicity, distribution and genomic localization
Escalera-Maurer, A., Messineo, A., Renault, T. T., Nicollin, E., Castaneda-Sastre, E., Brunot, M., Berrehail, C., Le Rhun, A.
10.1101/2025.08.07.668861 — Posted: 2025-08-07 — Discussion: 2026-01-26  Review Commons

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