bioRxiv/medRxiv TRiP Review Activity

524 Reviews — All Partners — Bioinformatics

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Sample-level modeling of single-cell data at scale with tinydenseR
Milanez-Almeida, P., Schildknecht, D., Linder, M., Brachmann, S. M., Weiss, A., Adler, F., Lenticchia, S. C., Meistertzheim, M., Wild, S., Cuttat, R., Jayaraman, P., Lee, L. H., Mulvey, T., Hassounah, N., Crafts, G., Quinn, D. S., Orlando, E. J.
10.1101/2025.11.26.690752 — Posted: 2025-11-30 — Discussion: 2026-05-05  Review Commons
Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing
Ohnezeit, D., Loliashvili, E., Putzel, G., Verstraten, R., Liu, J., Nicholson, L. S., Pironti, A., Jaffrey, S. R., Depledge, D. P., Wilson, A. C.
10.1101/2025.11.02.686099 — Posted: 2025-11-02 — Discussion: 2026-05-05  eLife
scfetch: an R package to access and format single-cell RNA sequencing datasets from public repositories
Song, Y., Gao, J., Wang, J.
10.1101/2023.11.18.567507 — Posted: 2023-11-20 — Discussion: 2026-04-28  GigaScience
HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets
Arboleda-Baena, C., Borim Correa, F., Saraiva, J. P., Castillo, S., Kasmanas, J. C., Chatzinotas, A., Jurburg, S. D.
10.1101/2025.07.24.666487 — Posted: 2025-07-29 — Discussion: 2026-04-28  GigaScience
Better confidence intervals in simulation-based inference
Rousset, F., Leblois, R., Estoup, A., Marin, J.-M.
10.1101/2024.09.30.615940 — Posted: 2024-10-02 — Discussion: 2026-04-16  Peer Community In
Gene specificity landscapes for comparative transcriptomic analysis across tissues, cell types, and species
Bot, E., Davila-Velderrain, J.
10.1101/2025.06.04.657813 — Posted: 2025-06-04 — Discussion: 2026-04-15  eLife
MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction
Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.
10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10  GigaScience
scDenorm: a denormalisation tool for integrating single-cell transcriptomics data
Huang, Y., Pournara, A. V., Ao, Y., Yang, L., Zhang, H., Zhang, Y., Liu, S., Brazma, A., Papatheodorou, I., Yang, X., Shi, M., Miao, Z.
10.1101/2025.05.10.653289 — Posted: 2025-05-15 — Discussion: 2026-04-09  GigaScience
Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling
Hallinan, C., Ji, H. J., Salzberg, S. L., Fan, J.
10.1101/2025.03.31.646342 — Posted: 2025-04-03 — Discussion: 2026-04-01  eLife
rnaends: an R package targeted to study the exact RNA ends at the nucleotide resolution
Caetano, T., Redder, P., Fichant, G., Barriot, R.
10.1101/2025.04.18.649472 — Posted: 2025-04-23 — Discussion: 2026-03-31  Peer Community In

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