Channel:  Rosetta Commons

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

33 Articles

FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds
Watkins, A. M., Das, R.
10.1101/764449 — Posted: 2019-09-10
Prediction of protein mutational free energy: benchmark and sampling improvements increase classification accuracy
Frenz, B., Lewis, S., King, I., Park, H., DiMaio, F., Song, Y.
10.1101/2020.03.18.989657 — Posted: 2020-03-20
De novo protein design by deep network hallucination
Anishchenko, I., Chidyausiku, T. M., Ovchinnikov, S., Pellock, S. J., Baker, D.
10.1101/2020.07.22.211482 — Posted: 2020-07-23
Integrative protein modeling in RosettaNMR from sparse paramagnetic restraints
Kuenze, G., Bonneau, R., Koehler Leman, J., Meiler, J.
10.1101/597872 — Posted: 2019-04-03
Large-scale design and refinement of stable proteins using sequence-only models
Singer, J. M., Novotney, S., Strickland, D., Haddox, H. K., Leiby, N., Rocklin, G. J., Chow, C. M., Roy, A., Bera, A. K., Motta, F. C., Cao, L., Strauch, E.-M., Chidyausiku, T. M., Ford, A., Ho, E., Mackenzie, C. O., Eramian, H., DiMaio, F., Grigoryan, G., Vaughn, M., Stewart, L. J., Baker, D., Klavins, E.
10.1101/2021.03.12.435185 — Posted: 2021-04-06
Sampling of Structure and Sequence Space of Small Protein Folds
Linsky, T. W., Noble, K., Tobin, A., Crow, R., Carter, L. P., Urbauer, J. L., Baker, D., Strauch, E.-M.
10.1101/2021.03.10.434454 — Posted: 2021-03-11
Single Layers of Attention Suffice to Predict Protein Contacts
Bhattacharya, N., Thomas, N., Rao, R., Dauparas, J., Koo, P., Baker, D., Song, Y. S., Ovchinnikov, S.
10.1101/2020.12.21.423882 — Posted: 2020-12-22
Improved protein structure refinement guided by deep learning based accuracy estimation
Hiranuma, N., Park, H., Anishchanka, I., Baek, M., Dauparas, J., Baker, D.
10.1101/2020.07.17.209643 — Posted: 2020-11-04
De novo design of transmembrane beta-barrels
Vorobieva, A. A., White, P., Liang, B., Horne, J. E., Bera, A. K., Chow, C. M., Gerben, S. R., Marx, S., Kang, A., Stiving, A. Q., Harvey, S. R., Marx, D. C., Khan, N., Fleming, K. G., Wysocki, V. H., Brockwell, D. J., Tamm, L. K., Radford, S. E., Baker, D.
10.1101/2020.10.22.346965 — Posted: 2020-10-23
Learning a force field from small-molecule crystal lattice predictions enables consistent sub-Angstrom protein-ligand docking
Park, H., Zhou, G., Baek, M., Baker, D., DiMaio, F.
10.1101/2020.09.06.285239 — Posted: 2020-09-07

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