Channel:  4D Nucleome

473 Articles

Polymer physics and machine learning reveal a combinatorial code linking chromatin 3D architecture to 1D epigenetics
Esposito, A., Bianco, S., Chiariello, A. M., Abraham, A., Fiorillo, L., Conte, M., Campanile, R., Nicodemi, M.
10.1101/2021.03.01.433416 — Posted: 2021-03-01
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data
Markowski, J., Kempfer, R., Kukalev, A., Irastorza-Azcarate, I., Loof, G., Kehr, B., Pombo, A., Rahmann, S., Schwarz, R. F.
10.1101/2020.01.30.927061 — Posted: 2021-02-21
Disruption of nuclear architecture as a cause of COVID-19 induced anosmia
Zazhytska, M., Kodra, A., Hoagland, D. A., Fullard, J., Shayya, H. J., Omer, A., Firestein, S., Gong, Q., Canoll, P., Goldman, J. E., Roussos, P., tenOever, B. R., Overdevest, J. B., Lomvardas, S.
10.1101/2021.02.09.430314 — Posted: 2021-02-09
Genome-wide variability in recombination activity is associated with meiotic chromatin organization
Jin, X., Fudenberg, G., Pollard, K. S.
10.1101/2021.01.06.425599 — Posted: 2021-01-07
Cohesin-mediated loop anchors confine the location of human replication origins
Emerson, D. J., Zhao, P. A., Klein, K., Ge, C., Zhou, L., Sasaki, T., Yang, L., Venvev, S. V., Gibcus, J. H., Dekker, J., Gilbert, D. M., Phillips-Cremins, J. E.
10.1101/2021.01.05.425437 — Posted: 2021-01-06
Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells
Swygert, S. G., Lin, D., Portillo-Ledesma, S., Lin, P.-Y., Hunt, D. R., Kao, C.-F., Schlick, T., Noble, W. S., Tsukiyama, T.
10.1101/2020.11.24.396713 — Posted: 2021-01-05
Removing unwanted variation between samples in Hi-C experiments
Fletez-Brant, K., Qiu, Y., Gorkin, D. U., Hu, M., Hansen, K. D.
10.1101/214361 — Posted: 2021-01-01
Systematic evaluation of chromosome conformation capture assays
Akgol Oksuz, B., Yang, L., Abraham, S., Venev, S. V., Krietenstein, N., Parsi, K. M., Ozadam, H., Oomen, M. E., Nand, A., Mao, H., Genga, R. M. J., Maehr, R., Rando, O., Mirny, L., Gibcus, J. H., Dekker, J.
10.1101/2020.12.26.424448 — Posted: 2020-12-27
Mechanical frustration of phase separation in the cell nucleus by chromatin
Zhang, Y., Lee, D. S. W., Meir, Y., Brangwynne, C. P., Wingreen, N. S.
10.1101/2020.12.24.424222 — Posted: 2020-12-24
Variability within rare cell states enables multiple paths towards drug resistance
Emert, B., Cote, C., Torre, E. A., Dardani, I. P., Jiang, C., Jain, N., Shaffer, S. M., Raj, A.
10.1101/2020.03.18.996660 — Posted: 2020-12-23

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