Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Composition dependent phase separation underlies directional flux through the nucleolus
Riback, J. A., Zhu, L., Ferrolino, M. C., Tolbert, M., Mitrea, D. M., Sanders, D. W., Wei, M.-T., Kriwacki, R. W., Brangwynne, C. P.
10.1101/809210 — Posted: 2019-10-22
Supervised classification enables rapid annotation of cell atlases
Pliner, H. A., Shendure, J., Trapnell, C.
10.1101/538652 — Posted: 2019-02-25
Genetic screening for single-cell variability modulators driving therapy resistance
Torre, E. A., Arai, E., Bayatpour, S., Beck, L. E., Emert, B. L., Shaffer, S. M., Mellis, I. A., Fane, M., Alicea, G., Budinich, K. A., Weeraratna, A., Shi, J., Raj, A.
10.1101/638809 — Posted: 2019-11-10
Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples
Schreiber, J., Bilmes, J., Noble, W.
10.1101/533273 — Posted: 2019-01-29
Capturing cell type-specific chromatin structural patterns by applying topic modeling to single-cell Hi-C data
Kim, H.-J., Yardimici, G. G., Bonora, G., Ramani, V., Liu, J., Qiu, R., Lee, C., Hesson, J., Ware, C. B., Shendure, J., Duan, Z., Noble, W. S.
10.1101/534800 — Posted: 2019-11-18
Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Transition
Zhang, H., Emerson, D., Gilgenast, T., Titus, K., Lan, Y., Huang, P., Zhang, D., Wang, H., Keller, C., Giardine, B., Hardison, R., Phillips-Cremins, J., Blobel, G.
10.1101/604355 — Posted: 2019-04-11
Two Contrasting Classes of Nucleolus-Associated Domains in Mouse Fibroblast Heterochromatin
Vertii, A., Ou, J., Yu, J., Yan, A., Pages, H., Liu, H., Zhu, L. J., Kaufman, P. D.
10.1101/484568 — Posted: 2018-12-03
Ultrastructural details of mammalian chromosome architecture
Krietenstein, N., Abraham, S., Venev, S., Abdennur, N., Gibcus, J., Hsieh, T.-H., Parsi, K. M., Yang, L., Maehr, R., Mirny, L., Dekker, J., Rando, O.
10.1101/639922 — Posted: 2019-05-17
Nucleated transcriptional condensates amplify gene expression
Wei, M.-T., Chang, Y.-C., Shimobayashi, S. F., Shin, Y., Brangwynne, C. P.
10.1101/737387 — Posted: 2019-08-21
pyBedGraph: a Python package for fast operations on 1-dimensional genomic signal tracks
Zhang, H. B., Kim, M., Chuang, J. H., Ruan, Y.
10.1101/709683 — Posted: 2019-07-20

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