Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

SARS-CoV-2 Restructures the Host Chromatin Architecture
Wang, R., Lee, J.-H., Xiong, F., Kim, J., Al Hasani, L., Yuan, X., Shivshankar, P., Krakowiak, J., Qi, C., Wang, Y., Eltzschig, H. K., Li, W.
10.1101/2021.07.20.453146 — Posted: 2021-07-21
Macrophage inflammatory and regenerative response periodicity is programmed by cell cycle and chromatin state
Daniel, B., Belk, J. A., Meier, S. L., Chen, A. Y., Sandor, K., Qi, Y., Kitano, H., Wheeler, J. R., Foster, D. S., Januszyk, M. S., Longaker, M. T., Chang, H. Y., Satpathy, A. T.
10.1101/2021.06.24.449850 — Posted: 2021-06-25
Systematic reconstruction of the cellular trajectories of mammalian embryogenesis
Qiu, C., Cao, J., Li, T., Srivatsan, S., Huang, X., Calderon, D., Noble, W. S., Disteche, C. M., Spielmann, M., Moens, C. B., Trapnell, C., Shendure, J.
10.1101/2021.06.08.447626 — Posted: 2021-06-09
Interrogation of the Dynamic Properties of Higher-Order Heterochromatin Using CRISPR/dCas9
Gao, Y., Han, M., Shang, S., Wang, H., Qi, L. S.
10.1101/2021.06.06.447300 — Posted: 2021-06-07
Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications
Rigano, A., Ehmsen, S., Ozturk, S. U., Ryan, J., Balashov, A., Hammer, M., Kirli, K., Bellve, K., Boehm, U., Brown, C. M., Chambers, J. J., Coleman, R. A., Cosolo, A., Faklaris, O., Fogarty, K., Guilbert, T., Hamacher, A. B., Itano, M. S., Keeley, D. P., Kunis, S., Lacoste, J., Laude, A., Ma, W., Marcello, M., Montero-Llopis, P., Nelson, G., Nitschke, R., Pimentel, J. A., Weidtkamp-Peters, S., Park, P. J., Alver, B., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.05.31.446382 — Posted: 2021-06-01
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, M., Huisman, M., Rigano, A., Boehm, U., Chambers, J. J., Gaudreault, N., North, A. J., Pimentel, J. A., Sudar, D., Bajcsy, P., Brown, C. M., Corbett, A. D., Faklaris, O., Lacoste, J., Laude, A., Nelson, G., Nitschke, R., Farzam, F., Smith, C., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.04.25.441198 — Posted: 2021-05-31
Cell-type specialization in the brain is encoded by specific long-range chromatin topologies
Winick-Ng, W., Kukalev, A., Harabula, I., Zea Redondo, L., Szabo, D., Meijer, M., Serebreni, L., Zhang, Y., Bianco, S., Chiariello, A. M., Irastorza Azcarate, I., Fiorillo, L., Musella, F., Thieme, C. J., Irani, E., Torlai Triglia, E., Kolodziejczyk, A. A., Abentung, A., Apostolova, G., Paul, E. J., Franke, V., Kempfer, R., Akalin, A., Teichmann, S. A., Dechant, G., Ungless, M. A., Nicodemi, M., Welch, L., Castelo-Branco, G., Pombo, A.
10.1101/2020.04.02.020990 — Posted: 2021-05-12
Integrated spatial genomics in tissues reveals invariant and cell type dependent nuclear architecture
Takei, Y., Zheng, S., Yun, J., Shah, S., Pierson, N., White, J., Schindler, S., Tischbirek, C., Yuan, G.-C., Cai, L.
10.1101/2021.04.26.441547 — Posted: 2021-04-27
Stripenn detects architectural stripes from chromatin conformation data using computer vision
Yoon, S., Vahedi, G.
10.1101/2021.04.16.440239 — Posted: 2021-04-18
3D super-resolution fluorescence microscopy maps the variable molecular architecture of the Nuclear Pore Complex
Jimenez Sabinina, V., Hossain, M. J., Heriche, J.-K., Hoess, P., Nijmeijer, B., Mosalaganti, S., Kueblbeck, M., Callegari, A., Szymborska, A., Beck, M., Ries, J., Ellenberg, J.
10.1101/2020.11.27.386599 — Posted: 2021-04-16

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