Channel:  4D Nucleome

474 Articles

Chromatin interaction aware gene regulatory modeling with graph attention networks
Karbalayghareh, A., Sahin, M., Leslie, C. S.
10.1101/2021.03.31.437978 — Posted: 2021-12-10
CRISPR Cas13-based tools to track and manipulate endogenous telomeric repeat-containing RNAs in living cells
Xu, M., Chigumira, T., Chen, Z., Tones, J., Zhao, R., Dahl, K. N., Chenoweth, D. M., Zhang, H.
10.1101/2021.12.03.471109 — Posted: 2021-12-04
Allelic correlation is a marker of tradeoffs between barriers to transmission of expression variability and signal responsiveness in genetic networks
Boe, R. H., Ayyappan, V., Schuh, L., Raj, A.
10.1101/2021.11.26.470134 — Posted: 2021-11-26
Single-Cell Multiomics Defines Tolerogenic Extrathymic Aire-Expressing Populations with Unique Homology to Thymic Epithelium
Wang, J., Lareau, C. A., Bautista, J. L., Gupta, A. R., Sandor, K., Germino, J., Yin, Y., Arvedson, M. P., Reeder, G. C., Cramer, N. T., Xie, F., Ntranos, V., Satpathy, A. T., Anderson, M. S., Gardner, J. M.
10.1101/2021.11.05.467513 — Posted: 2021-11-06
Bromodomains regulate dynamic targeting of the PBAF chromatin remodeling complex to chromatin hubs
Kenworthy, C. A., Haque, N., Liou, S.-H., Chandris, P., Wong, V., Dziuba, P., Lavis, L. D., Liu, W.-L., Singer, R. H., Coleman, R. A.
10.1101/111674 — Posted: 2021-11-02
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding
Conte, M., Irani, E., Chiariello, A. M., Abraham, A., Bianco, S., Esposito, A., Nicodemi, M.
10.1101/2021.11.02.466589 — Posted: 2021-11-02
CTCF blocks anti-sense transcription initiation at divergent gene promoters
Luan, J., Syrett, C. M., Vermunt, M. W., Cote, A., Tome, J. M., Zhang, H., Huang, A., Luppino, J. M., Keller, C. A., Giardine, B. M., Zhang, S., Dunagin, M. C., Zhang, Z., Joyce, E. F., Lis, J. T., Raj, A., Hardison, R. C., Blobel, G. A.
10.1101/2021.10.30.465508 — Posted: 2021-10-30
The 4D Nucleome Data Portal: a resource for searching and visualizing curated nucleomics data
Reiff, S. B., Schroeder, A. J., Kirli, K., Cosolo, A., Bakker, C., Mercado, L., Lee, S. B., Veit, A. D., Balashov, A. K., Vitzthum, C., Ronchetti, W., Pitman, K. M., Johnson, J., Ehmsen, S. R., Kerpedjiev, P., Abdennur, N. A., Imakaev, M., Ozturk, S. U., Camoglu, U., Mirny, L., Gehlenborg, N., Alver, B. H., Park, P. J.
10.1101/2021.10.14.464435 — Posted: 2021-10-15
Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation
Singh, A. P., Wu, P., Ryabichko, S., Raimundo, J., Swan, M., Wieschaus, E., Gregor, T., Toettcher, J. E.
10.1101/2021.10.13.464280 — Posted: 2021-10-14
Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer
Kersten, K., Hu, K. H., Combes, A. J., Samad, B., Harwin, T., Ray, A., Rao, A. A., Cai, E., Marchuk, K., Artichoker, J., Courau, T., Shi, Q., Belk, J., Satpathy, A. T., Krummel, M. F.
10.1101/2021.09.27.461866 — Posted: 2021-09-28

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