Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Chromosome organization by one-sided and two-sided loop extrusion
Banigan, E. J., van den Berg, A. A., Brandao, H. B., Marko, J. F., Mirny, L. A.
10.1101/815340 — Posted: 2020-04-02
NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
Yang, L., Ghosh, R. P., Franklin, J. M., You, C., Liphardt, J.
10.1101/749754 — Posted: 2019-08-28
Spatial genome re-organization between fetal and adult hematopoietic stem cells
Chen, C., Yu, W., Tober, J., Gao, P., He, B., Lee, K., Trieu, T., Blobel, G., Speck, N., Tan, K.
10.1101/628214 — Posted: 2019-05-05
Cohesin depleted cells rebuild functional nuclear compartments after endomitosis
Cremer, M., Brandstetter, K., Maiser, A., Rao, S. S., Schmid, V., Guirao-Ortiz, M., Mitra, N., Mamberti, S., Klein, K. N., Gilbert, D. M., Leonhardt, H., Cardoso, M. C., Lieberman Aiden, E., Harz, H., Cremer, T.
10.1101/816611 — Posted: 2020-09-14
Multiplex chromatin interaction analysis by signal processing and statistical algorithms
Kim, M., Zheng, M., Tian, S. Z., Capurso, D., Lee, B., Chuang, J. H., Ruan, Y.
10.1101/665232 — Posted: 2019-06-10
Co-opted transposons help perpetuate conserved higher-order chromosomal structures
Choudhary, M. N., Friedman, R. Z., Wang, J. T., Jang, H. S., Zhuo, X., Wang, T.
10.1101/485342 — Posted: 2019-10-14
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
Wutz, G., St. Hilaire, B. T. G., Ladurner, R., Stocsits, R., Nagasaka, K., Pignard, B., Sanborn, A., Tang, W., Varnai, C., Ivanov, M., Schoenfelder, S., van der Lelij, P., Huang, X., Duernberger, G., Roitinger, E., Mechtler, K., Davidson, I. F., Fraser, P., Aiden, E. L., Peters, J. M.
10.1101/779058 — Posted: 2019-09-23
A supervised learning framework for chromatin loop detection in genome-wide contact maps
Salameh, T. J., Wang, X., Song, F., Zhang, B., Wright, S. M., Khunsriraksakul, C., Yue, F.
10.1101/739698 — Posted: 2019-08-20
Distinct features of nucleolus-associated domains in mouse embryonic stem cells
Bizhanova, A., Yan, A., Yu, J., Zhu, L. J., Kaufman, P. D.
10.1101/740480 — Posted: 2019-08-20
FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data
Crowley, C., Yang, Y., Qiu, Y., Hu, B., Abnousi, A., Lipinski, J., Plewczynski, D., Wu, D., Won, H., Ren, B., Hu, M., Li, Y.
10.1101/619288 — Posted: 2020-12-20

RSS  Channel RSS