Channel: Morgridge Institute

This collection includes bioRxiv and medRxiv papers from authors at Morgridge Institute.

146 Articles

A Nile Grass Rat Transcriptomic Landscape Across 22 Organs By Ultra-deep Sequencing and Comparative RNA-seq pipeline (CRSP)

Toh, H., Bagheri, A., Dewey, C., Stewart, R., Yan, L., Clegg, D., Thomson, J., Jiang, P.

10.1101/2022.02.04.479193 — Posted: 2022-05-13

Early Endosome Capture Proteomics and its Application to Amyloid Precursor Protein Intramembrane Processing by β and γ-Secretases

Park, H., Yu, Q., Hundley, F. V., Overmyer, K., Serrano, L., Paulo, J. A., Paoli, J. C., Swarup, S., Coon, J., Gygi, S., Harper, W.

10.1101/2022.03.31.486371 — Posted: 2022-03-31

An approachable, flexible, and practical machine learning workshop for biologists

Magnano, C. S., Mu, F., Russ, R. S., Cvetkovic, M., Treu, D., Gitter, A.

10.1101/2022.02.03.479008 — Posted: 2022-03-19

A versatile pattern-forming cortical circuit based on Rho, F-actin, Ect2 and RGA-3/4

Michaud, A., Leda, M., Swider, Z. T., Kim, S., He, J., Landino, J., Valley, J. R., Huisken, J., Goryachev, A. B., von Dassow, G., Bement, W.

10.1101/2022.03.08.483353 — Posted: 2022-03-08

Severe COVID-19 shares a common neutrophil activation signature with other acute inflammatory states

Schimke, L. F., Marques, A. H., Baiocchi, G. C., Prado, C. A., Fonseca, D. L., Freire, P. P., Placa, D. R., Filgueira, I. S., Salgado, R. C., Jansen-Marques, G., Oliveira, A. E., Peron, J. P. S., Cabral Miranda, G., Barbuto, J. A. M., Camara, N. O. S., Calich, V. L., Ochs, H. D., Condino-Neto, A., Overmyer, K. A., Coon, J. J., Balnis, J., Jaitovich, A., Schulte-Schrepping, J., Ulas, T., Schultze, J. L., Nakaya, H. I., Jurisica, I., Marques, O. C.

10.1101/2021.07.30.454529 — Posted: 2022-02-14

SpatialCorr: Identifying Gene Sets with Spatially Varying Correlation Structure

Bernstein, M. N., Ni, Z., Prasad, A., Brown, J., Mohanty, C., Stewart, R., Newton, M. A., Kendziorski, C.

10.1101/2022.02.04.479191 — Posted: 2022-02-08

Modifications of lipoic arm by reactive nitrogen species regulate α-ketoacid dehydrogenases

Seim, G. L., Fang, Z., Pagliarini, D., Fan, J.

10.1101/2022.01.31.478543 — Posted: 2022-01-31

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

Toh, H., Yang, C., Formenti, G., Raja, K., Yan, L., Tracey, A., Chow, W., Howe, K., Bergeron, L. A., Zhang, G., Haase, B., Mountcastle, J., Fedrigo, O., Fogg, J., Kirilenko, B., Munegowda, C., Hiller, M., Jain, A., Kihara, D., Rhie, A., Phillippy, A. M., Swanson, S. A., Jiang, P., Clegg, D. O., Jarvis, E. D., Thomson, J. A., Stewart, R., Chaisson, M. J. P., Bukhman, Y. V.

10.1101/2021.12.08.471837 — Posted: 2021-12-10

Label-free imaging to track reprogramming of human somatic cells

Saha, K., Skala, M. C., Molugu, K., Battistini, G. A., Heaster, T., Rouw, J., Guzman, E. C.

10.1101/2021.12.08.471827 — Posted: 2021-12-10

Somatic regulation of female germ cell regeneration and development in planarians

Khan, U. W., Newmark, P. A.

10.1101/2021.11.22.469583 — Posted: 2021-11-23

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