Channel: Morgridge Institute

This collection includes bioRxiv and medRxiv papers from authors at Morgridge Institute.

146 Articles

Interspecies Chimeric Conditions Affect the Developmental Rate of Human Pluripotent Stem Cells

Brown, J., Barry, C., Schmitz, M., Argus, C., Bolin, J., Schwartz, M., Van Aartsen, A., Steill, J., Swanson, S., Stewart, R., Thomson, J., Kendziorski, C.

10.1101/2020.09.12.293357 — Posted: 2020-09-12

CRISPR screens in physiologic medium reveal conditionally essential genes in human cells

Rossiter, N. J., Huggler, K. S., Adelmann, C. H., Keys, H. R., Soens, R. W., Sabatini, D. M., Cantor, J. R.

10.1101/2020.08.31.275107 — Posted: 2020-08-31

Automating parameter selection to avoid implausible biological pathway models

Magnano, C. S., Gitter, A.

10.1101/845834 — Posted: 2020-08-20

Unique inflammatory profile is associated with higher SARS-CoV-2 acute respiratory distress syndrome (ARDS) mortality.

Balnis, J., Adam, A. P., Chopra, A., Chieng, H. C., Feustel, P. J., Overmyer, K. A., Shishkova, E., Coon, J. J., Singer, H. A., Judson, M. A., Jaitovich, A.

10.1101/2020.05.21.20051300 — Posted: 2020-08-18

Consensus-based somatic variant-calling method correlates FBXW7 mutations with poor prognosis in canine B-cell lymphoma

White, M. E., Hayward, J. J., Hertafeld, S. R., Castelhano, M. G., Leung, W., Dave, S., Bhinder, B. H., Elemento, O. L., Boyko, A. R., Richards, K. L., Suter, S. E.

10.1101/2020.08.16.250100 — Posted: 2020-08-17

Large-scale Multi-omic Analysis of COVID-19 Severity

Overmyer, K. A., Shishkova, E., Miller, I., Balnis, J., Bernstein, M. N., Peters-Clarke, T. M., Meyer, J. G., Quan, Q., Muehlbauer, L. K., Trujillo, E. A., He, Y., Chopra, A., Chieng, H., Tiwari, A., Judson, M. A., Paulson, B., Brademan, D. R., Zhu, Y., Serrano, L. R., Linke, V., Drake, L. A., Adam, A. P., Schwartz, B. S., Singer, H. A., Swanson, S., Mosher, D. F., Stewart, R., Coon, J. J., Jaitovich, A.

10.1101/2020.07.17.20156513 — Posted: 2020-07-19

CellO: Comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

Matthew N. Bernstein, Zhongjie Ma, Michael Gleicher, Colin N. Dewey

10.1101/634097 — Posted: 2020-07-10

In vivo fluorescence lifetime imaging captures metabolic changes in macrophages during wound responses in zebrafish

Miskolci, V., Tweed, K., Lasarev, M., Britt, E. C., McDougal, C. E., Walsh, A. J., Fan, J., Sauer, J.-D., Skala, M., Huttenlocher, A.

10.1101/2020.06.16.153361 — Posted: 2020-06-16

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Seirup, M., Chu, L.-F., Sengupta, S., Leng, N., Browder, H., Kapadia, K., Shafer, C. M., Duffin, B., Elwell, A. L., Bolin, J. M., Swanson, S., Stewart, R., Kendziorski, C., Thomson, J. A., Bacher, R.

10.1101/764191 — Posted: 2020-06-10

Reference genome and demographic history of the most endangered marine mammal, the vaquita

Morin, P. A., Archer, F. I., Avila, C. D., Balacco, J. R., Bukhman, Y. V., Chow, W., Fedrigo, O., Formenti, G., Fronczek, J. A., Fungtammasan, A., Gulland, F. M. D., Haase, B., Heide-Jorgensen, M. P., Houck, M., Howe, K., Misuraca, A. C., Mountcastle, J., Musser, W., Paez, S., Pelan, S., Phillippy, A. M., Rhie, A., Robinson, J. A., Rojas-Bracho, L., Rowles, T. K., Ryder, O. A., Smith, C. R., Stevenson, S., Taylor, B. L., Teilmann, J., Torrance, J., Wells, R. S., Westgate, A., Jarvis, E.

10.1101/2020.05.27.098582 — Posted: 2020-05-28

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