Channel: Morgridge Institute

This collection includes bioRxiv and medRxiv papers from authors at Morgridge Institute.

160 Articles

CellO: Comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

Matthew N. Bernstein, Zhongjie Ma, Michael Gleicher, Colin N. Dewey

10.1101/634097 — Posted: 2020-07-10

In vivo fluorescence lifetime imaging captures metabolic changes in macrophages during wound responses in zebrafish

Miskolci, V., Tweed, K., Lasarev, M., Britt, E. C., McDougal, C. E., Walsh, A. J., Fan, J., Sauer, J.-D., Skala, M., Huttenlocher, A.

10.1101/2020.06.16.153361 — Posted: 2020-06-16

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Seirup, M., Chu, L.-F., Sengupta, S., Leng, N., Browder, H., Kapadia, K., Shafer, C. M., Duffin, B., Elwell, A. L., Bolin, J. M., Swanson, S., Stewart, R., Kendziorski, C., Thomson, J. A., Bacher, R.

10.1101/764191 — Posted: 2020-06-10

Reference genome and demographic history of the most endangered marine mammal, the vaquita

Morin, P. A., Archer, F. I., Avila, C. D., Balacco, J. R., Bukhman, Y. V., Chow, W., Fedrigo, O., Formenti, G., Fronczek, J. A., Fungtammasan, A., Gulland, F. M. D., Haase, B., Heide-Jorgensen, M. P., Houck, M., Howe, K., Misuraca, A. C., Mountcastle, J., Musser, W., Paez, S., Pelan, S., Phillippy, A. M., Rhie, A., Robinson, J. A., Rojas-Bracho, L., Rowles, T. K., Ryder, O. A., Smith, C. R., Stevenson, S., Taylor, B. L., Teilmann, J., Torrance, J., Wells, R. S., Westgate, A., Jarvis, E.

10.1101/2020.05.27.098582 — Posted: 2020-05-28

Adaptable pulsatile flow generated by quantitative imaging of stem-cell derived cardiomyocytes for disease modeling

Qian, T., Gil, D. A., Contreras Guzman, E., Gastfriend, B. D., Tweed, K. E., Palecek, S. P., Skala, M. C.

10.1101/2020.03.20.000752 — Posted: 2020-03-24

Autofluorescence imaging of 3D tumor-macrophage microscale cultures resolves spatial and temporal dynamics of macrophage metabolism

Heaster, T., Humayun, M., Yu, J., Beebe, D. J., Skala, M.

10.1101/2020.03.12.989301 — Posted: 2020-03-12

Proteomics, lipidomics, metabolomics and 16S rDNA sequencing of dental plaque from patients with diabetes and periodontal disease

Overmyer, K. A., Rhoads, T., Merrill, A. E., Ye, Z., Westphall, M. S., Acharya, A., Shukla, S., Coon, J. J.

10.1101/2020.02.25.963967 — Posted: 2020-02-26

Quantifying dynamic protein acetylation using quantitative stoichiometry

Baeza, J., Lawton, A. J., Fan, J., Smallegan, M. J., Leinert, I., Gandhi, T., Bernhardt, O. M., Reiter, L., Denu, J. M.

10.1101/472530 — Posted: 2020-02-19

Insights from a survey-based analysis of the academic job market

Fernandes, J. D., Sarabipour, S., Smith, C. T., Niemi, N. M., Jadavji, N. M., Kozik, A. J., Holehouse, A. S., Pejaver, V., Symmons, O., Bisson Filho, A. W., Haage, A.

10.1101/796466 — Posted: 2019-12-02

Region-specific regulation of stem cell-driven regeneration in tapeworms

Rozario, T., Quinn, E. B., Wang, J., Davis, R. E., Newmark, P. A.

10.1101/495234 — Posted: 2019-09-17

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