Channel: University of Chicago

This collection includes bioRxiv and medRxiv papers from authors at University of Chicago.

3087 Articles

On the state of protein function prediction: a report on the fourth CAFA challenge

Ramola, R., De Paolis Klauza, M. C., Piovesan, D., Peng, Y., Joshi, P., Mehdiabadi, M., Quaglia, F., Pancsa, R., Chemes, L. B., Ahn, H., Altenhoff, A. M., Asgari, E., Aspromonte, M. C., Atalay, V., Babbi, G., Baldazzi, D., Barot, M. M., Ben-Hur, A., Benso, A., Berenberg, D., Bjorne, J., Boecker, F., Boldi, P., Bonello, J., Bordin, N., Borole, P., Ebrahimpour Boroojeny, A., Cao, R., Di Carlo, S., Casadio, R., Casiraghi, E., Chang, J.-M., Chen, C., Chen, T.-M., Cheng, J., Chiu, S., Dalkiran, A., Davidovic, R. S., Dessimoz, C., Diao, R., Djeddi, W. E., Dogan, T., Flannery, S. T., Fontana, P., Fra

10.64898/2026.05.06.722942 — Posted: 2026-06-12

The αβTCR repertoire at scale in the immgenT dataset

Croze, M., Yang, L., Candeias, S., Magill, I., Casey, O., Piekarsa, V., Vijaykumar, B., Giudicelli, V., Kossida, S., Zemmour, D., Benoist, C., Project, i.

10.64898/2026.01.30.702900 — Posted: 2026-06-12

A common connectome-based neural reference space across affective, autonomic, and wakefulness arousal

Bhattacharyya, K., Huberman-Shlaes, J., Tong, Y., Zhu, Y., Ke, J., Park, J. S., Corriveau, A., Rosenberg, M. D., Leong, Y. C.

10.64898/2026.06.08.730730 — Posted: 2026-06-11

Natural Selection in the Wake of Catastrophe

Lin, J. Y., Granek, O., Sodicoff, J., Kuehn, S., Pincus, D., Vitelli, V.

10.64898/2026.06.08.730870 — Posted: 2026-06-11

OmicsPred as a centralised resource for genetic prediction of multi-omic traits

Foguet, C., Gil, L., Xu, Y., Salazar-Magana, S., Rtichie, S. C., Persyn, E., Im, H. K., Inouye, M., Lambert, S. A.

10.64898/2026.05.15.26353298 — Posted: 2026-06-11

Phylogenetic coherence in microbiome composition across environmental gradients

Chakraverti-Wuerthwein, M. S., Domenig, A., Kuehn, S.

10.64898/2026.06.07.730742 — Posted: 2026-06-11

Outbred Drosophila populations reveal diet-dependent genetic effects on development time

Bai, Y., Shabbir, S., Chen, Y., Morgante, F., Ludwig, M., Park, S.-Y., Acharya, M., Li, Y., Ali, S., Trudnak, A., Rajesh, M., Kreitman, M., Zhuang, X.

10.64898/2026.06.05.730474 — Posted: 2026-06-10

Reductive carboxylation via isocitrate dehydrogenase 1 supports cardiac metabolic adaptation during oncometabolic stress.

Shankar, T., Gao, Y., Erebholo, Z., Nakama, N., Kim, K., Williamson, I., Snyder, N., Kransdorf, E., DeBerardinis, R., Taegtmeyer, H., Faubert, B., Karlstaedt, A.

10.64898/2026.06.06.727699 — Posted: 2026-06-10

Chyme reinfusion using the Insides System to reduce parenteral nutrition dependence in Type 2 intestinal failure: multicentre randomised controlled trial (REINFUSE)

Milne, T., Lal, S., Farrer, K., Evans, J., Thomas, K., Randhawa, N., Rogers, J., Mercer, D., Carroll, R., Rosenthal, M., Jafri, S.-M., Vaizey, C., Gabe, S., layfield, D., Burke, D., Frampton, C.

10.64898/2026.04.26.26351226 — Posted: 2026-06-10

eQTM (expression quantitative trait methylation) Atlas: a comprehensive resource of over 11 million DNA methylation-gene expression associations through across 11 tissues and 4 diseases

Sriram, A., Kim, S., Caldino Bohn, R., Chen, W., Liu, T., Yue, M., Jain, N., Pierce, B., Joehanes, R., Levy, D., Patin, E., Quintana-Murci, L., Park, H. J., Celedon, J. C.

10.64898/2026.06.07.730721 — Posted: 2026-06-10

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