Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4303 Articles

Impaired T-cell and antibody immunity after COVID-19 infection in chronically immunosuppressed transplant recipients

Ashokkumar, C., Rohan, V., Kroemer, A. H., Rao, S., Mazariegos, G., Higgs, B. W., Nadig, S., Almeda, J., Dhani, H., Khan, K., Yazigi, N., Ekong, U., Kaufman, S., Betancourt-Garcia, M. M., Mukund, K., Sethi, P., Mehrotra, S., Soltys, K., Singh, M. S., Bond, G., Khanna, A., Ningappa, M., Spishock, B., Sindhi, E., Atale, N., Saunders, M., Baliga, P., Fishbein, T., Subramaniam, S., Sindhi, R.

10.1101/2021.05.03.442371 — Posted: 2021-05-04

Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing

Bickhart, D. M., Kolmogorov, M., Tseng, E., Portik, D., Korobeynikov, A., Tolstoganov, I., Uritskiy, G., Liachko, I., Sullivan, S. T., Shin, S. B., Zorea, A., Andreu, V. P., Panke-Buisse, K., Medema, M. H., Mizrahi, I., Pevzner, P. A., Smith, T. P.

10.1101/2021.05.04.442591 — Posted: 2021-05-04

Mutational signatures in esophageal squamous cell carcinoma from eight countries of varying incidence

Moody, S., Senkin, S., Ashiqul Islam, S. M., Wang, J., Nasrollahzadeh, D., Cortez Cardoso Penha, R., Fitzgerald, S., Bergstrom, E. N., Atkins, J., He, Y., Khandekar, A., Smith Byrne, K., Carreira, C., Gaborieau, V., Latimer, C., Thomas, E., Abnizova, I., Bucciarelli, P. E., Jones, D., Teague, J. W., Abedi-Ardekani, B., Serra, S., Scoazec, J.-Y., Saffar, H., Azmoudeh-Ardelan, F., Sotoudeh, M., Nikmanesh, A., Eden, M., Richman, P., Campos, L. S., Fitzgerald, R. C., Felipe Ribeiro, L., Dzamalala, C., Theophil Mmbaga, B., Shibata, T., Menya, D., Goldstein, A. M., Hu, N., Malekzadeh, R., Fazel, A.

10.1101/2021.04.29.21255920 — Posted: 2021-05-04

In heart failure reactivation of RNA-binding proteins drives the transcriptome into a fetal state

D'Antonio, M., Nguyen, J. P., Arthur, T. D., Matsui, H., Donovan, M. K. R., DAntonio-Chronowska, A., Frazer, K. A.

10.1101/2021.04.30.442191 — Posted: 2021-05-01

Signatures of copy number alterations in human cancer

Steele, C. D., Abbasi, A., Islam, A. S. M., Khandekar, A., Haase, K., Hames, S., Tarabichi, M., Lesluyes, T., Flanagan, A. M., Mertens, F., Van Loo, P., Alexandrov, L. B., Pillay, N.

10.1101/2021.04.30.441940 — Posted: 2021-04-30

Transcriptome analyses reveal tau isoform-driven changes in transposable element and gene expression

Rissman, R. A., Grundman, J., Spencer, B., Sarsoza, F.

10.1101/2021.04.30.442101 — Posted: 2021-04-30

SmProt: a reliable repository with comprehensive annotation of small proteins identified from ribosome profiling

Li, Y., Zhou, H., Chen, X., Zheng, Y., Kang, Q., Hao, D., Zhang, L., Song, T., Luo, H., Hao, Y., Chen, Y., Chen, R., Zhang, P., He, S.

10.1101/2021.04.29.441405 — Posted: 2021-04-30

Metabolic adaptation to progressive mitochondrial dysfunction in aging POLGD257A mice

Lim, E. W., Handzlik, M. K., Trefts, E., Gengatharan, J. M., Shaw, R. J., Metallo, C. M.

10.1101/2021.04.29.441996 — Posted: 2021-04-30

Systematic morphological and morphometric analysis of identified olfactory receptor neurons in Drosophila melanogaster

Nava Gonzales, C., McKaughan, Q., Bushong, E. A., Cauwenberghs, K., Ng, R., Madany, M., Ellisman, M. H., Su, C.-Y.

10.1101/2021.04.28.441861 — Posted: 2021-04-29

Allelic variation in Class I HLA determines pre-existing memory responses to SARS-CoV-2 that shape the CD8+ T cell repertoire upon viral exposure

Francis, J. M., Leistritz-Edwards, D., Dunn, A., Tarr, C., Lehman, J., Dempsey, C., Hamel, A., Rayon, V., Liu, G., Wang, Y., Wille, M., Durkin, M., Hadley, K., Sheen, A., Roscoe, B., Ng, M., Rockwell, G., Manto, M., Gienger, E., Nickerson, J., MGH COVID-19 Collection and Processing Team, , Moarefi, A., Noble, M., Malia, T., Bardwell, P. D., Gordon, W., Swain, J., Skoberne, M., Sauer, K., Harris, T., Goldrath, A. W., Shalek, A. K., Coyle, A. J., Benoist, C., Pregibon, D. C.

10.1101/2021.04.29.441258 — Posted: 2021-04-29

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