Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4178 Articles

Radical Protein Footprinting in Mammalian Whole Blood

Tobin, L., Misra, S. K., Liu, H., Jones, L. M., Sharp, J. S.

10.1101/2024.09.29.615683 — Posted: 2024-09-29

Neuropsychiatric Symptoms Cluster and Fluctuate Over Time in Behavioral Variant Frontotemporal Dementia

Morrow, C. B., Kamath, V., Dickerson, B. C., Eldaief, M., Rezaii, N. C., Wong, B., McGinnis, S., Darby, R., Staffaroni, A. M., Lapid, M. I., Pascual, B., Rojas, J. C., Masdeu, J. C., Tsapkini, K., Huey, E. D., Fisher, D. W., Pantelyat, A., Balaji, A., Sah, E., Litvan, I., Rascovsky, K., Ghoshal, N., Domoto-Reilly, K., Kornak, J., Onyike, C.

10.1101/2024.09.26.24314180 — Posted: 2024-09-28

Consensus guidelines for eligibility assessment of pathogenic variants to antisense oligonucleotide treatments

Cheerie, D., Meserve, M., Beijer, D., Kaiwar, C., Newton, L., Tavares, A. L. T., Verran, A. S., Sherrill, E., Leonard, S., Sanders, S. J., Blake, E., Elkhateeb, N., Gandhi, A., Liang, N. S. Y., Morgan, J. T., Verwillow, A., Verheijen, J., Giles, A., Williams, S., Chopra, M., Croft, L., Dafsari, H. S., Davidson, A. E., Friedman, J., Gregor, A., Haque, B., Lechner, R., Montgomery, K.-A., Ryten, M., Schober, E., Siegel, G., Sullivan, P., Zardetto, B., Yu, T. W., Synofzik, M., Aartsma-Rus, A., Costain, G., Lauffer, M., N=1 Collaborative

10.1101/2024.09.27.24314122 — Posted: 2024-09-28

Profiling ranked list enrichment scoring in sparse data elucidates algorithmic tradeoffs

Wenzel, A. T., Jun, J., Liefeld, T., Tamayo, P., Mesirov, J. P.

10.1101/2024.06.03.597180 — Posted: 2024-09-28

Cooperativity among clustered κB sites within promoters and enhancers dictates transcriptional specificity of NF-κB RelA along with specific cofactors

Shahabi, S., Biswas, T., Shen, Y., Zou, Y., Sanahmadi, R., Ghosh, G.

10.1101/2024.07.03.601930 — Posted: 2024-09-28

Different signaling interpretations by PKC eta and theta control T cell function and exhaustion

Mann, T. H., Knox, H. M., Ma, S., Furgiuele, J., Globig, A.-M., LaPorta, M., Chung, H. K., McDonald, B., Ghassemian, M., Zhao, S., Tseng, H., Farsakoglu, Y., Tripple, V., Koo, J., Newton, A. C., Kaech, S. M.

10.1101/2024.09.26.615103 — Posted: 2024-09-27

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Raman, K., Kratochvil, M., Olivier, B. G., Konig, M., Sengupta, P., Baskaran, D. K. K., Nguyen, T. V. N., Lobo, D., Wilken, S. E., Tiwari, K. K., Raghu, A. K., Palanikumar, I., Raajaraam, L., Ibrahim, M., Balakrishnan, S., Umale, S., Bergmann, F., Malpani, T., Satagopam, V. P., Schneider, R., Beber, M. E., Keating, S., Anton, M., Renz, A., Lakshmanan, M., Lee, D.-Y., Koduru, L., Mostolizadeh, R., Dias, O., Cunha, E., Oliveira, A., Lee, Y. Q., Zengler, K., Santibanez-Palominos, R., Kumar, M., Barberis, M., Puniya, B. L., Helikar, T., Dinh, H. V., Suthers, P. F., Maranas, C. D., Casini, I., Logh

10.1101/2024.09.24.614797 — Posted: 2024-09-26

Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability

Telusma, B., Farre, J.-C., Cui, D. S., Subramani, S., Davis, J. H.

10.1101/2024.09.24.614842 — Posted: 2024-09-26

Intestinal Epithelial PTPN2 Limits Pathobiont Colonization by Immune-Directed Antimicrobial Responses

Chatterjee, P., Spalinger, M. R., Acevedo, C., Gries, C. M., Manz, S., Canale, V., Santos, A. N., Shawki, A., Sayoc-Becerra, A., Lei, H., Crawford, M. S., Eckmann, L., Borneman, J., McCole, D.

10.1101/2024.09.24.614848 — Posted: 2024-09-26

Concurrent single-pulse (sp) TMS/fMRI to reveal the causal connectome in healthy and patient populations

Glick, C. C., Gajawelli, N., Sun, Y., Badami, F., Saggar, M., Etkin, A.

10.1101/2024.09.25.614833 — Posted: 2024-09-26

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