Channel: Cold Spring Harbor Laboratory

This collection includes bioRxiv and medRxiv papers from authors at Cold Spring Harbor Laboratory.

687 Articles

Indel variant analysis of short-read sequencing data with Scalpel

Han Fang, Ewa A. Grabowska, Kanika Arora, Vladimir Vacic, Michael C. Zody, Ivan Iossifov, Jason A. ORawe, Yiyang Wu, Laura T Jimenez Barron, Julie Rosenbaum, Michael Ronemus, Yoon-ha Lee, Zihua Wang, Gholson J. Lyon, Michael Wigler, Michael C. Schatz, Giuseppe Narzisi

10.1101/028050 — Posted: 2015-10-01

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

Moritz Smolka, Philipp Rescheneder, Michael C Schatz, Arndt von Haeseler, Fritz J Sedlazeck

10.1101/025858 — Posted: 2015-09-01

Concerted activities of Mcm4, Sld3 and Dbf4 in control of origin activation and DNA replication fork progression

Yi-Jun Sheu, Justin B Kinney, Bruce Stillman

10.1101/021832 — Posted: 2015-08-18

SCT promoter methylation is a highly discriminative biomarker for lung and many other cancers

Adwait Sathe, Xiaotu Ma, Michael Zhang

10.1101/018515 — Posted: 2015-08-05

A rapid and tunable method to temporally control Cas9 expression enables the identification of essential genes and the interrogation of functional gene interactions in vitro and in vivo.

Serif Senturk, Nitin H Shirole, Dawid D. Nowak, Vincenzo Corbo, Alexander Vaughan, David A. Tuveson, Lloyd C. Trotman, Adam Kepecs, Frank Stegmeier, Raffaella Sordella

10.1101/023366 — Posted: 2015-07-28

Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

Sara Goodwin, James Gurtowski, Scott Ethe-Sayers, Panchajanya Deshpande, Michael Schatz, W Richard McCombie

10.1101/013490 — Posted: 2015-07-15

The next 20 years of genome research

Michael Schatz

10.1101/020289 — Posted: 2015-06-02

Learning quantitative sequence-function relationships from high-throughput biological data

Gurinder S Atwal, Justin B Kinney

10.1101/020172 — Posted: 2015-05-31

Sources of PCR-induced distortions in high-throughput sequencing datasets

Justus M Kebschull, Anthony M Zador

10.1101/008375 — Posted: 2015-05-21

Whole genome analysis of an extended pedigree with Prader–Willi Syndrome, hereditary hemochromatosis, and dysautonomia-like symptoms

Han Fang, Yiyang Wu, Margaret Yoon, Laura T. Jiménez-Barrón, Jason A. O'Rawe, Gareth Highnam, David Mittelman, Gholson Lyon

10.1101/019182 — Posted: 2015-05-11

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