Channel: Cold Spring Harbor Laboratory

This collection includes bioRxiv and medRxiv papers from authors at Cold Spring Harbor Laboratory.

754 Articles

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

Luo, R., Sedlazeck, F. J., Darby, C. A., Kelly, S. M., Schatz, M. C.

10.1101/103549 — Posted: 2017-01-26

Network cloning using DNA barcodes

Shuvaev, S. A., Başerdem, B., Zador, A., Koulakov, A. A.

10.1101/098343 — Posted: 2017-01-05

The DOE Systems Biology Knowledgebase (KBase)

Arkin, A. P., Stevens, R. L., Cottingham, R. W., Maslov, S., Henry, C. S., Dehal, P., Ware, D., Perez, F., Harris, N. L., Canon, S., Sneddon, M. W., Henderson, M. L., Riehl, W. J., Gunter, D., Murphy-Olson, D., Chan, S., Kamimura, R. T., Brettin, T. S., Meyer, F., Chivian, D., Weston, D. J., Glass, E. M., Davison, B. H., Kumari, S., Allen, B. H., Baumohl, J., Best, A. A., Bowen, B., Brenner, S. E., Bun, C. C., Chandonia, J.-M., Chia, J.-M., Colasanti, R., Conrad, N., Davis, J. J., DeJongh, M., Devoid, S., Dietrich, E., Drake, M. M., Dubchak, I., Edirisinghe, J. N., Fang, G., Faria, J. P., Fryb

10.1101/096354 — Posted: 2016-12-22

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

Nattestad, M., Alford, M. C., Sedlazeck, F. J., Schatz, M. C.

10.1101/087981 — Posted: 2016-11-15

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

Adams, R. M., Mora, T., Walczak, A. M., Kinney, J. B.

10.1101/036335 — Posted: 2016-11-15

Metrics for comparing Neuronal Tree Shapes based on Persistent Homology

Li, Y., Ascoli, G., Mitra, P. P., Wang, Y.

10.1101/087551 — Posted: 2016-11-14

Rare disruptive variants in the DISC1 Interactome and Regulome: association with cognitive ability and schizophrenia

Teng, S., Thomson, P., McCarthy, S., Kramer, M., Muller, S., Lihm, J., Morris, S., Soares, D., Hennah, W., Harris, S., Camargo, L. M., Malkov, V., McIntosh, A., Millar, J. K., Blackwood, D., Evans, K., Deary, I., Porteous, D., McCombie, W. R.

10.1101/083816 — Posted: 2016-10-27

Ribbon: Visualizing complex genome alignments and structural variation

Nattestad, M., Chin, C.-S., Schatz, M. C.

10.1101/082123 — Posted: 2016-10-20

Using predictive specificity to determine when gene set analysis is biologically meaningful

Sara Ballouz, Paul Pavlidis, Jesse Gillis

10.1101/080127 — Posted: 2016-10-10

MUMdex: MUM-based structural variation detection

Peter A Andrews, Ivan Iossifov, Jude Kendall, Steven Marks, Lakshmi Muthuswamy, Zihua Wang, Dan Levy, Michael Wigler

10.1101/078261 — Posted: 2016-09-30

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