Channel: University of California, Berkeley

This collection includes bioRxiv and medRxiv papers from authors at University of California, Berkeley.

4004 Articles

homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes

Freyman, W. A., Johnson, M. G., Rothfels, C. J.

10.1101/2020.10.22.351486 — Posted: 2022-07-22

Efficient decoding of large-scale neural population responses with Gaussian-process multiclass regression

Greenidge, C. D., Scholl, B., Yates, J., Pillow, J. W.

10.1101/2021.08.26.457795 — Posted: 2022-07-21

The dual role of a multi-heme cytochrome in methanogenesis: MmcA is important for energy conservation and carbon metabolism in Methanosarcina acetivorans

Nayak, D. D., Gupta, D., Downing, B.

10.1101/2022.07.20.500911 — Posted: 2022-07-21

GO Bench: Shared-hub for Universal Benchmarking of Machine Learning-Based Protein Functional Annotations

Dickson, A. M., Asgari, E., McHardy, A. C., Mofrad, M. R. K.

10.1101/2022.07.19.500685 — Posted: 2022-07-20

Cas9+ conditionally immortalized neutrophil progenitors as a tool for genome wide CRISPR screening for neutrophil differentiation and function

Jong, R. M., Ching, K., Garelis, N. E., Zilinskas, A., Nguyenla, X., Rawal, S., Hill, B., Luckie, B., Shallow, L., Cox, J. S., Barton, G., Stanley, S.

10.1101/2022.07.19.500665 — Posted: 2022-07-20

Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin

Jaffe, A. L., Bardot, C., Le Jeune, A.-H., Liu, J., Colombet, J., Perriere, F., Billard, H., Castelle, C. J., Lehours, A.-C., Banfield, J.

10.1101/2022.07.18.500538 — Posted: 2022-07-19

u-track 3D: measuring and interrogating dense particle dynamics in three dimensions.

Roudot, P., Legant, W. R., Zou, Q., Dean, K. M., Isogai, T., Welf, E. S., David, A. F., Gerlich, D. W., Fiolka, R. P., Betzig, E., Danuser, G.

10.1101/2020.11.30.404814 — Posted: 2022-07-18

AGO2 silences mobile transposons in the nucleus of quiescent cells

Sala, L., Chandrasekhar, S., Cosby, R. L., La Rocca, G., Macfarlan, T., Awasthi, P., Chari, R., Kruhlak, M., Vidigal, J. A.

10.1101/2022.07.17.500356 — Posted: 2022-07-17

Probing the KRas Switch II Groove by Fluorine NMR Spectroscopy

Peacock, D. M., Kelly, M. J. S., Shokat, K. M.

10.1101/2022.07.15.500267 — Posted: 2022-07-16

Rare Ribosomal RNA Sequences from Archaea Stabilize the Bacterial Ribosome

Nissley, A. J., Penev, P. I., Watson, Z. L., Banfield, J., Cate, J. H.

10.1101/2022.07.15.499945 — Posted: 2022-07-16

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