bioRxiv/medRxiv TRiP Review Activity

166 Reviews — eLife — Genomics

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Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2025-10-20  eLife
The genetic control of rapid genome content divergence in Arabidopsis thaliana
Fiscus, C. J., Koenig, D.
10.1101/2025.06.11.659220 — Posted: 2025-06-16 — Discussion: 2025-10-20  eLife
CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development
Ji, L., Wang, A., Sonthalia, S., Naiman, D. Q., Younes, L., Colantuoni, C., Geman, D.
10.1101/2023.04.06.535943 — Posted: 2023-04-07 — Discussion: 2025-10-20  eLife
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2025-10-14  eLife
Heterogeneity of Genetic Sequence within Quasi-species of Influenza Virus Revealed by Single-Molecule Sequencing
Tamao, K., Noji, H., Tabata, K. V.
10.1101/2025.06.19.658006 — Posted: 2025-06-19 — Discussion: 2025-10-08  eLife
Chromatin accessibility variation provides insights into missing regulation underlying immune-mediated diseases
Jeong, R., Bulyk, M. L.
10.1101/2024.04.12.589213 — Posted: 2024-04-15 — Discussion: 2025-10-03  eLife
Genome reorganization and its functional impact during breast cancer progression
Reed, K. S. M., Fritz, A., Greenyer, H., Heselmeyer-Haddad, K., Frietze, S., Stein, J., Stein, G., Misteli, T.
10.1101/2025.05.14.654144 — Posted: 2025-05-17 — Discussion: 2025-09-10  eLife
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
Chao, K.-H., Mao, A., Liu, A., Salzberg, S. L., Pertea, M.
10.1101/2025.03.20.644351 — Posted: 2025-03-23 — Discussion: 2025-09-09  eLife
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2025-05-29 — Discussion: 2025-09-02  eLife
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-08-27  eLife

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