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456 Reviews — GigaScience — All Subjects

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SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Parekh, S., Ziegenhain, C., Vieth, B., Enard, W., Hellmann, I.
10.1101/153940 — Posted: 2017-06-22 — Discussion: 2022-01-22  GigaScience
Clinker: visualising fusion genes detected in RNA-seq data
Schmidt, B. M., Davidson, N. M., Hawkins, A. D., Bartolo, R., Majewski, I. J., Ekert, P. G., Oshlack, A.
10.1101/218586 — Posted: 2017-11-13 — Discussion: 2022-01-22  GigaScience
Error Correcting Optical Mapping Data
Mukherjee, K., Washimkar, D., Muggli, M. D., Salmela, L., Boucher, C.
10.1101/285692 — Posted: 2018-03-21 — Discussion: 2022-01-22  GigaScience
BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
Network based conditional genome wide association analysis of human metabolomics
Tsepilov, Y. A., Sharapov, S. Z., Zaytseva, O. O., Krumsiek, J., Prehn, C., Adamski, J., Kastenmuller, G., Wang-Sattler, R., Strauch, K., Gieger, C., Aulchenko, Y. S.
10.1101/096982 — Posted: 2016-12-27 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience
ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations
Yu, S.-H., Vogel, J., Foerstner, K. U.
10.1101/143081 — Posted: 2017-05-27 — Discussion: 2022-01-22  GigaScience
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation
Miller, J. R., Koren, S., Dilley, K. A., Puri, V., Brown, D. M., Harkins, D. M., Thibaud-Nissen, F., Rosen, B., Chen, X.-G., Tu, Z., Sharakhov, I. V., Sharakhova, M. V., Sebra, R., Stockwell, T. B., Bergman, N. H., Sutton, G. G., Phillippy, A. M., Piermarini, P. M., Shabman, R. S.
10.1101/157081 — Posted: 2017-06-30 — Discussion: 2022-01-21  GigaScience
Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors
Lukes, T., Pospisil, J., Fliegel, K., Lasser, T., Hagen, G. M.
10.1101/246488 — Posted: 2018-01-11 — Discussion: 2022-01-21  GigaScience

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