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428 Reviews — GigaScience — All Subjects

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VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.
Mills, R., Zhao, X., Weber, A. M.
10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13  GigaScience
The Healthy Brain Network Serial Scanning Initiative: A resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.
David O'Connor, Natan Vega Potler, Meagan Kovacs, Ting Xu, Lei Ai, John Pellman, Tamara Vanderwal, Lucas Parra, Samantha Cohen, Satrajit Ghosh, Jasmine Escalera, Natalie Grant-Villegas, Yael Osman, Anastasia Bui, Richard Cameron Craddock, Michael Peter Milham
10.1101/078881 — Posted: 2016-10-03 — Discussion: 2022-01-04  GigaScience
AGOUTI: improving genome assembly and annotation using transcriptome data
Simo V Zhang, Luting Zhuo, Matthew W Hahn
10.1101/033019 — Posted: 2015-11-26 — Discussion: 2022-01-03  GigaScience
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature
Lange, M., Alako, B., Cochrane, G., Ghaffar, M., Mascher, M., Habekost, P.-K., Hillebrand, U., Scholz, U., Zunder, F., Freitag, J., Scholz, A. H.
10.1101/2021.05.10.443393 — Posted: 2021-05-10 — Discussion: 2022-01-03  GigaScience
NCBI BLAST+ integrated into Galaxy
Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo
10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03  GigaScience
ISA API: An open platform for interoperable life science experimental metadata
Johnson, D., Cochrane, K., Davey, R. P., Etuk, A., Gonzalez-Beltran, A., Haug, K., Izzo, M., Larralde, M., Lawson, T. N., Minotto, A., Moreno, P., Nainala, V. C., O'Donovan, C., Pireddu, L., Roger, P., Shaw, F., Steinbeck, C., Weber, R. J., Sansone, S.-A., Rocca-Serra, P.
10.1101/2020.11.13.382119 — Posted: 2020-11-16 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
Myth-busting the provider-user relationship for digital sequence information
Scholz, A. H., Lange, M., Habekost, P., Oldham, P., Cancio, I., Cochrane, G., Freitag, J.
10.1101/2021.08.02.454535 — Posted: 2021-08-03 — Discussion: 2022-01-03  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets
Apurva Narechania, Richard H Baker, Rob DeSalle, Barun Mathema, Barry Kreiswirth, Sergios-Orestis Kolokotronis, Paul J Planet
10.1101/045773 — Posted: 2016-03-25 — Discussion: 2022-01-03  GigaScience

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