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456 Reviews — GigaScience — All Subjects

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Single molecule, full-length transcript sequencing provides insight into the extreme metabolism of ruby-throated hummingbird Archilochus colubris
Workman, R. E., Myrka, A. M., Tseng, E., Wong, G. W., Welch, K. C., Timp, W.
10.1101/117218 — Posted: 2017-03-15 — Discussion: 2022-01-22  GigaScience
Reproducible genomics analysis pipelines with GNU Guix
Wurmus, R., Uyar, B., Osberg, B., Franke, V., Gosdschan, A., Wreczycka, K., Ronen, J., Akalin, A.
10.1101/298653 — Posted: 2018-04-11 — Discussion: 2022-01-22  GigaScience
NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family.
Chaliotis, A., Vlastaridis, P., Ntountoumi, C., Botou, M., Yalelis, V., Lazou, P., Tatsaki, K., Mossialos, D., Frillingos, S., Amoutzias, G.
10.1101/332452 — Posted: 2018-05-28 — Discussion: 2022-01-22  GigaScience
Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria
Thorpe, H. A., Bayliss, S. C., Sheppard, S. K., Feil, E. J.
10.1101/179515 — Posted: 2017-08-22 — Discussion: 2022-01-22  GigaScience
Arabidopsis phenotyping through Geometric Morphometrics
Manacorda, C. A., Asurmendi, S.
10.1101/194449 — Posted: 2017-09-27 — Discussion: 2022-01-22  GigaScience
Experimenting with reproducibility in bioinformatics
Kim, Y.-M., Poline, J.-B., Dumas, G.
10.1101/143503 — Posted: 2017-06-20 — Discussion: 2022-01-22  GigaScience
YAMP: a framework enabling reproducibility in metagenomics research
Visconti, A., Martin, T. C., Falchi, M.
10.1101/223016 — Posted: 2017-11-21 — Discussion: 2022-01-22  GigaScience
Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction
Pospisil, J., Lukes, T., Bendesky, J., Fliegel, K., Spendier, K., Hagen, G. M.
10.1101/426296 — Posted: 2018-09-25 — Discussion: 2022-01-22  GigaScience
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Parekh, S., Ziegenhain, C., Vieth, B., Enard, W., Hellmann, I.
10.1101/153940 — Posted: 2017-06-22 — Discussion: 2022-01-22  GigaScience
AMBER: Assessment of Metagenome BinnERs
Meyer, F., Hofmann, P., Belmann, P., Garrido-Oter, R., Fritz, A., Sczyrba, A., McHardy, A. C.
10.1101/239582 — Posted: 2017-12-25 — Discussion: 2022-01-22  GigaScience

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