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448 Reviews — GigaScience — All Subjects

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Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
Webster, T. H., Couse, M., Grande, B. M., Karlins, E., Phung, T., Richmond, P. A., Whitford, W., Wilson Sayres, M. A.
10.1101/346940 — Posted: 2018-06-14 — Discussion: 2022-01-23  GigaScience
A critical comparison of technologies for a plant genome sequencing project
Paajanen, P., Kettleborough, G., Lopez-Girona, E., Giolai, M., Heavens, D., Baker, D., Lister, A., Wilde, G., Hein, I., Macaulay, I., Bryan, G. J., Clark, M. D.
10.1101/201830 — Posted: 2017-10-11 — Discussion: 2022-01-23  GigaScience
LION/web: a web-based ontology enrichment tool for lipidomic data analysis
Molenaar, M., Jeucken, A., Wassenaar, T. A., van de Lest, C. H. A., Brouwers, J. F., Helms, J. B.
10.1101/398040 — Posted: 2018-08-22 — Discussion: 2022-01-23  GigaScience
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks
Hodzic, E., Shrestha, R., Zhu, K., Cheng, K., Collins, C. C., Sahinalp, S. C.
10.1101/369850 — Posted: 2018-07-16 — Discussion: 2022-01-23  GigaScience
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Nicholls, S. M., Quick, J. C., Tang, S., Loman, N. J.
10.1101/487033 — Posted: 2018-12-04 — Discussion: 2022-01-23  GigaScience
High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat
Wang, X., Xuan, H., Evers, B., Shrestha, S., Pless, R., Poland, J.
10.1101/527911 — Posted: 2019-01-23 — Discussion: 2022-01-23  GigaScience
Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)
Chen, W., Shakir, S., Bigham, M., Fei, Z., Jander, G.
10.1101/438499 — Posted: 2018-10-22 — Discussion: 2022-01-23  GigaScience
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Piccolo, S. R., Lee, T. J., Suh, E., Hill, K.
10.1101/675181 — Posted: 2019-06-19 — Discussion: 2022-01-23  GigaScience
A collection of yeast cellular electron cryotomography data
Gan, L., Ng, C. T., Chen, C., Cai, S.
10.1101/594432 — Posted: 2019-04-05 — Discussion: 2022-01-23  GigaScience
TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer
Singh, A., Bhanot, G., Khiabanian, H.
10.1101/245712 — Posted: 2018-01-25 — Discussion: 2022-01-23  GigaScience

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