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359 Reviews — GigaScience — All Subjects

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NanoSim: nanopore sequence read simulator based on statistical characterization
Chen Yang, Justin Chu, René L Warren, Inanç Birol
10.1101/044545 — Posted: 2016-03-18 — Discussion: 2022-01-13  GigaScience
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
Luo, R., Schatz, M. C., Salzberg, S.
10.1101/111393 — Posted: 2017-02-24 — Discussion: 2022-01-13  GigaScience
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
Zimin, A. V., Puiu, D., Hall, R., Kingan, S., Salzberg, S. L.
10.1101/159111 — Posted: 2017-07-03 — Discussion: 2022-01-13  GigaScience
Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy
Albuquerque, M. A., Grande, B. M., Ritch, E., Jessa, S., Krzywinski, M. I., Grewal, J., Shah, S., Boutros, P., Morin, R.
10.1101/089631 — Posted: 2016-11-26 — Discussion: 2022-01-13  GigaScience
Kronos: a workflow assembler for genome analytics and informatics
M Jafar Taghiyar, Jamie Rosner, Diljot Grewal, Bruno Grande, Radhouane Aniba, Jasleen Grewal, Paul C Boutros, Ryan D Morin, Ali Bashashati, Sohrab P Shah
10.1101/040352 — Posted: 2016-02-19 — Discussion: 2022-01-13  GigaScience
VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.
Mills, R., Zhao, X., Weber, A. M.
10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13  GigaScience
Indexcov: fast coverage quality control for whole-genome sequencing
Pedersen, B. S., Collins, R. L., Talkwoski, M. E., Quinlan, A. R.
10.1101/148296 — Posted: 2017-06-09 — Discussion: 2022-01-13  GigaScience
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
Michael P Pound, Alexandra J Burgess, Michael H Wilson, Jonathan A Atkinson, Marcus Griffiths, Aaron S Jackson, Adrian Bulat, Georgios Tzimiropoulos, Darren M Wells, Erik H Murchie, Tony P Pridmore, Andrew P French
10.1101/053033 — Posted: 2016-05-12 — Discussion: 2022-01-13  GigaScience
fastBMA: Scalable Network Inference and Transitive Reduction
Hung, L.-H., Shi, K., Wu, M., Young, W. C., Raftery, A., Yeung, K. Y.
10.1101/099036 — Posted: 2017-01-06 — Discussion: 2022-01-13  GigaScience
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury
10.1101/066613 — Posted: 2016-07-28 — Discussion: 2022-01-13  GigaScience

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