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418 Reviews — GigaScience — All Subjects

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HAMAP rules as SPARQL - A portable annotation pipeline for genomes and proteomes
Bolleman, J., de Castro, E., Baratin, D., Gehant, S., Cuche, B. A., Auchincloss, A., COUDERT, E., Hulo, C., Masson, P., Pedruzzi, I., Rivoire, C., Xenarios, I., Redaschi, N., Bridge, A.
10.1101/615294 — Posted: 2019-04-24 — Discussion: 2022-01-23  GigaScience
Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood
Zhao, Y., Li, X., Wang, J., Wan, Z., Gao, K., Yi, G., Wang, X., Wu, J., Fan, B., Zhang, W., Chen, F., Yang, H., Wang, J., Xu, X., Li, B., Liu, S., Zhao, W., Hou, Y., Liu, X.
10.1101/346106 — Posted: 2018-06-13 — Discussion: 2022-01-23  GigaScience
duphold: scalalable, depth-based annotation and curation of high-confidence structural variant calls.
Pedersen, B. S., Quinlan, A. R.
10.1101/465385 — Posted: 2018-11-08 — Discussion: 2022-01-23  GigaScience
Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola
Grigorev, K., Kliver, S., Dobrynin, P., Komissarov, A., Wolfsberger, W., Krasheninnikova, K., Afanador-Hernandez, Y. M., Paulino, L. A., Carreras, R., Rodriguez, L. E., Nunez, A., Silva, F., Hernandez-Martich, D., Majeske, A. J., Antunes, A., Roca, A. L., O'Brien, S. J., Martinez-Cruzado, J. C., Oleksyk, T. K.
10.1101/164574 — Posted: 2017-07-18 — Discussion: 2022-01-22  GigaScience
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Peters, K., Bradbury, J., Bergmann, S., Capuccini, M., Cascante, M., de Atauri, P., Ebbels, T., Foguet, C., Glen, R., Gonzalez-Beltran, A., Handakas, E., Hankemeier, T., Herman, S., Haug, K., Holub, P., Izzo, M., Jacob, D., Johnson, D., Jourdan, F., Kale, N., Karaman, I., Khalili, B., Emami Khoonsari, P., Kultima, K., Lampa, S., Larsson, A., Moreno, P., Neumann, S., Novella, J. A., O'Donovan, C., Pearce, J. T., Peluso, A., Pireddu, L., Piras, M. E., Reed, M. A., Rocca-Serra, P., Roger, P., Rosato, A., Rueedi, R., Ruttkies, C., Sadawi, N., Salek, R., Sansone, S.-A., Selivanov, V., Spjuth, O.
10.1101/409151 — Posted: 2018-09-06 — Discussion: 2022-01-22  GigaScience
Hot-starting software containers for bioinformatics analyses
Zhang, P., Hung, L.-H., Lloyd, W. J., Yeung, K. Y.
10.1101/204495 — Posted: 2017-10-17 — Discussion: 2022-01-22  GigaScience
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Alakwaa, F., Huang, S., Garmire, L.
10.1101/283408 — Posted: 2018-03-16 — Discussion: 2022-01-22  GigaScience
NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform
Calus, S. T., Ijaz, U. Z., Pinto, A. J.
10.1101/244517 — Posted: 2018-01-07 — Discussion: 2022-01-22  GigaScience
Real-time DNA barcoding in a remote rainforest using nanopore sequencing
Pomerantz, A., Penafiel, N., Arteaga, A., Bustamante, L., Pichardo, F., Coloma, L. A., Barrio-Amoros, C. L., Salazar-Valenzuela, D., Prost, S.
10.1101/189159 — Posted: 2017-09-15 — Discussion: 2022-01-22  GigaScience
Aequatus: An open-source homology browser
Anil S. Thanki, Sarah Ayling, Javier Herrero, Robert P. Davey
10.1101/055632 — Posted: 2016-05-27 — Discussion: 2022-01-22  GigaScience

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