bioRxiv/medRxiv TRiP Review Activity

439 Reviews — GigaScience — All Subjects

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A sulfatide-centered ultra-high resolution magnetic resonance MALDI imaging benchmark dataset for MS1-based lipid annotation tools
Gruber, L., Schmidt, S., Enzlein, T., Hopf, C.
10.1101/2025.10.20.683394 — Posted: 2025-10-20 — Discussion: 2026-01-05  GigaScience
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits
Tsang, I., Percival-Alwyn, L., Rawsthorne, S., Cockram, J., Leigh, F., Atkinson, J.
10.1101/2025.07.14.664697 — Posted: 2025-07-18 — Discussion: 2025-11-28  GigaScience
Improving the Reliability and Quality of Nextflow Pipelines with nf-test
Forer, L., Schoenherr, S.
10.1101/2024.05.25.595877 — Posted: 2024-05-30 — Discussion: 2025-10-30  GigaScience
CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology
Xu, Q., Wu, L., Rebelo, M., Feng, S., Yu, X., Farheen, F., Kihara, D., Zhou, Z. H.
10.1101/2025.09.09.675185 — Posted: 2025-09-10 — Discussion: 2025-10-30  GigaScience
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience
On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species
Howard, C., Denton, A., Jackson, B., Bates, A., Jay, J., Yatsenko, H., Raman, P. S., Thomas, A., Oatley, G., do Amaral, R. V., Göktan, Z. E., Gomez, J. P. N., Clayton Lucey, I., Sinclair, E., Quail, M. A., Blaxter, M., Howe, K., Lawniczak, M.
10.1101/2025.04.11.648334 — Posted: 2025-04-11 — Discussion: 2025-10-30  GigaScience
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience
Reproducible processing of TCGA regulatory networks
Fanfani, V., Shutta, K. H., Mandros, P., Fischer, J., Saha, E., Micheletti, S., Chen, C., Ben Guebila, M., Lopes-Ramos, C. M., Quackenbush, J.
10.1101/2024.11.05.622163 — Posted: 2024-11-07 — Discussion: 2025-10-30  GigaScience

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