bioRxiv/medRxiv TRiP Review Activity

418 Reviews — GigaScience — All Subjects

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WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning
Nguyen, H.-H., Rudar, J., Lesperance, N., Vernygora, O., Taylor, G. W., Laing, C., Lapen, D., Leung, C. K., Lung, O.
10.1101/2025.02.25.639900 — Posted: 2025-02-28 — Discussion: 2025-09-30  GigaScience
SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues
Pechuan Jorge, X., Li, X., Risom, T., Zubkov, A., Tabatsky, E., Prilipko, A., Ye, X., Shi, Z., Nowicka, m., Peale, F., Hibar, D., Ziai, J., Jesudason, R., Orlova, D.
10.1101/2022.08.22.504841 — Posted: 2022-08-23 — Discussion: 2025-09-30  GigaScience
A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection
Arshad, F., Jayaraman, S., Talenti, A., Owen, R., Mohsin, M., Mansoor, S., Asif, M., Prendergast, J. G.
10.1101/2025.05.04.652079 — Posted: 2025-05-09 — Discussion: 2025-09-30  GigaScience
CNSistent integration and feature extraction from somatic copy number profiles
Streck, A., Schwarz, R. F.
10.1101/2024.12.23.630118 — Posted: 2024-12-23 — Discussion: 2025-09-30  GigaScience
A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps
Patel, H. R., Alreja, K., Reis, A. M., Chang, J. K., Chew, Z. A., Jung, H., Hammond, J. M., Deveson, I. W., Ruiz-Herrera, A., Marin-Gual, L., Holleley, C. E., Zhang, X., Lister, N. C., Whiteley, S. L., Xiong, L., Dissanayake, D. S. B., Waters, P. D., Georges, A.
10.1101/2025.05.01.651798 — Posted: 2025-05-02 — Discussion: 2025-08-26  GigaScience
Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
Guang, X., Yang, J., Zhang, S., Guo, F., Li, L., Lian, X., Zeng, T., Cai, C., Liu, F., Li, Z., Hu, Y., Fang, D., He, W., Sahu, S. K., Li, W., Lu, H., Li, Y., Liu, H., Xu, X., Guang, Y., Hu, F., Dong, Y., Wei, T.
10.1101/2024.09.05.611405 — Posted: 2024-09-07 — Discussion: 2025-08-26  GigaScience
A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes
Guo, Q., Pan, Y., Dai, W., Guo, F., Zeng, T., Chen, W., Mi, Y., Zhang, Y., Shi, S., Jiang, W., Cai, H., Wu, B., Zhou, Y., Wang, Y., Yang, C., Shi, X., Yan, X., Chen, J., Cai, C., Yang, J., Xu, X., Gu, Y., Dong, Y., Li, Q.
10.1101/2024.09.05.611321 — Posted: 2024-09-10 — Discussion: 2025-08-26  GigaScience
Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
Aramburu, O., Pardo, B. G., Rodriguez-Villamayor, P., Blanco Hortas, A., Lamas, J., Dewari, P. S., Perojil, D., Boudinot, P., Macqueen, D. J., Bouza, C., Martinez, P.
10.1101/2024.02.15.580452 — Posted: 2024-02-15 — Discussion: 2025-08-04  GigaScience
SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework
Hua, Y., Weng, L., Zhao, F., Rambow, F.
10.1101/2024.08.01.606144 — Posted: 2024-08-04 — Discussion: 2025-08-04  GigaScience
Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database
Ikeda, S., Zou, Z., Bono, H., Moriya, Y., Kawashima, S., Katayama, T., Oki, S., Ohta, T.
10.1101/2025.02.17.638570 — Posted: 2025-02-22 — Discussion: 2025-07-08  GigaScience

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