bioRxiv/medRxiv TRiP Review Activity

434 Reviews — GigaScience — All Subjects

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On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species
Howard, C., Denton, A., Jackson, B., Bates, A., Jay, J., Yatsenko, H., Raman, P. S., Thomas, A., Oatley, G., do Amaral, R. V., Göktan, Z. E., Gomez, J. P. N., Clayton Lucey, I., Sinclair, E., Quail, M. A., Blaxter, M., Howe, K., Lawniczak, M.
10.1101/2025.04.11.648334 — Posted: 2025-04-11 — Discussion: 2025-10-30  GigaScience
CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology
Xu, Q., Wu, L., Rebelo, M., Feng, S., Yu, X., Farheen, F., Kihara, D., Zhou, Z. H.
10.1101/2025.09.09.675185 — Posted: 2025-09-10 — Discussion: 2025-10-30  GigaScience
GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience
Reproducible processing of TCGA regulatory networks
Fanfani, V., Shutta, K. H., Mandros, P., Fischer, J., Saha, E., Micheletti, S., Chen, C., Ben Guebila, M., Lopes-Ramos, C. M., Quackenbush, J.
10.1101/2024.11.05.622163 — Posted: 2024-11-07 — Discussion: 2025-10-30  GigaScience
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Hartmann, U., Shaham, E., Nathan, D., Blech, I., Zeevi, D.
10.1101/2025.02.16.638517 — Posted: 2025-02-20 — Discussion: 2025-10-30  GigaScience
Improving the Reliability and Quality of Nextflow Pipelines with nf-test
Forer, L., Schoenherr, S.
10.1101/2024.05.25.595877 — Posted: 2024-05-30 — Discussion: 2025-10-30  GigaScience
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species
Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J. J., Toepfer, T., Boehne, A.
10.1101/2025.01.22.633903 — Posted: 2025-01-24 — Discussion: 2025-09-30  GigaScience
The Open Pediatric Cancer Project
Geng, Z., Wafula, E., Corbett, R. J., Zhang, Y., Jin, R., Gaonkar, K. S., Shukla, S., Rathi, K. S., Hill, D., Lahiri, A., Miller, D. P., Sickler, A., Keith, K., Blackden, C., Chroni, A., Brown, M. A., Kraya, A. A., Koschmann, C. J., Aldape, K., Huang, X., Rood, B. R., Mason, J. L., Trooskin, G. R., Abdullaev, Z., Wang, P., Zhu, Y., Farrow, B. K., Farrel, A., Dybas, J. M., Zhong, C., Van Kuren, N., Zhang, B., Santi, M., Phul, S., Chinwalla, A. T., Resnick, A. C., Diskin, S. J., Tasian, S., Stefankiewicz, S., Maris, J. M., Ennis, B. M., Lueder, M. R., Naqvi, A. S., Coleman, N., Ma, W., Taylor, D
10.1101/2024.07.09.599086 — Posted: 2024-07-11 — Discussion: 2025-09-30  GigaScience

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