bioRxiv/medRxiv TRiP Review Activity

428 Reviews — GigaScience — All Subjects

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Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes
Bagci, C., Negri, T., Buena-Atienza, E., Gross, C., Ossowski, S., Ziemert, N.
10.1101/2025.05.28.656579 — Posted: 2025-05-28 — Discussion: 2025-10-30  GigaScience
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Hartmann, U., Shaham, E., Nathan, D., Blech, I., Zeevi, D.
10.1101/2025.02.16.638517 — Posted: 2025-02-20 — Discussion: 2025-10-30  GigaScience
A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection
Arshad, F., Jayaraman, S., Talenti, A., Owen, R., Mohsin, M., Mansoor, S., Asif, M., Prendergast, J. G.
10.1101/2025.05.04.652079 — Posted: 2025-05-09 — Discussion: 2025-09-30  GigaScience
Nanopore- and AI-empowered metagenomic viability inference
Urel, H., Benassou, S., Reska, T., Marti, H., Rayo, E., Martin, E. J., Schloter, M., Ferguson, J. M., Kesselheim, S., Borel, N., Urban, L.
10.1101/2024.06.10.598221 — Posted: 2024-06-11 — Discussion: 2025-09-30  GigaScience
A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species
Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J. J., Toepfer, T., Boehne, A.
10.1101/2025.01.22.633903 — Posted: 2025-01-24 — Discussion: 2025-09-30  GigaScience
First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
Nasr, E., Henger, A., Gruning, B., Zierep, P., Batut, B.
10.1101/2024.06.26.600753 — Posted: 2024-06-30 — Discussion: 2025-09-30  GigaScience
Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography
Walle, M., Matheson, B. E., Boyd, S. K.
10.1101/2025.04.19.649449 — Posted: 2025-04-23 — Discussion: 2025-09-30  GigaScience
WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning
Nguyen, H.-H., Rudar, J., Lesperance, N., Vernygora, O., Taylor, G. W., Laing, C., Lapen, D., Leung, C. K., Lung, O.
10.1101/2025.02.25.639900 — Posted: 2025-02-28 — Discussion: 2025-09-30  GigaScience
Using synthetic RNA to benchmark poly(A) length inference from direct RNA sequencing.
Chang, J. J.-Y., Yang, X., Teng, H., Reames, B., Corbin, V., Coin, L. J. M.
10.1101/2024.10.25.620206 — Posted: 2024-10-25 — Discussion: 2025-09-30  GigaScience

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