bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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Long-reads assembly of the Brassica napus reference genome, Darmor-bzh
Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.
10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24  GigaScience
Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools
Cuadrat, R. R. d. C., Sorokina, M., Andrade, B. G., Davila, A. M. R.
10.1101/765446 — Posted: 2019-09-19 — Discussion: 2022-01-24  GigaScience
Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements
Hosseini, M., Pratas, D., Morgenstern, B., Pinho, A. J.
10.1101/2019.12.23.887349 — Posted: 2019-12-25 — Discussion: 2022-01-24  GigaScience
DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data
Simon, L. M., Yan, F., Zhao, Z.
10.1101/864165 — Posted: 2019-12-05 — Discussion: 2022-01-24  GigaScience
High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome
Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.
10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24  GigaScience
Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity
Chu, B. B., Keys, K. L., Sinsheimer, J. S., Lange, K.
10.1101/697755 — Posted: 2019-07-11 — Discussion: 2022-01-24  GigaScience
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of hexaploid wheat and diploid Aegilops tauschii
Lu, F.-H., McKenzie, N., Gardiner, L.-J., Luo, M., Hall, A., Bevan, M. W.
10.1101/571133 — Posted: 2019-03-07 — Discussion: 2022-01-24  GigaScience
Community composition and development of the post-weaning piglet gut microbiome
Gaio, D., DeMaere, M. Z., Anantanawat, K., Eamens, G. J., Liu, M., Zingali, T., Falconer, L., Chapman, T. A., Djordjevic, S. P., Darling, A. E.
10.1101/2020.07.20.211326 — Posted: 2020-07-20 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Young, M. D., Behjati, S.
10.1101/303727 — Posted: 2018-04-20 — Discussion: 2022-01-24  GigaScience

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