bioRxiv/medRxiv TRiP Review Activity

448 Reviews — GigaScience — All Subjects

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Building the Mega Single Cell Transcriptome Ocular Meta-Atlas
Swamy, V. S., Fufa, T. D., Hufnagel, R. B., McGaughey, D. M.
10.1101/2021.03.26.437190 — Posted: 2021-03-28 — Discussion: 2022-01-24  GigaScience
Correcting for experiment-specific variability in expression compendia can remove underlying signals
Lee, A. J., Park, Y., Doing, G., Hogan, D. A., Greene, C. S.
10.1101/2020.05.03.066597 — Posted: 2020-05-03 — Discussion: 2022-01-24  GigaScience
Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qianhui Huang, Lana X. Garmire
10.1101/2020.07.09.195677 — Posted: 2020-07-10 — Discussion: 2022-01-24  GigaScience
Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience
Genome Diversity in Ukraine
Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.
10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24  GigaScience
Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C., Roger, J., Cattle, M., McKay, L., Learned, K., Lyle, G., Kephart, E., Currie, R., Lam, D. L., Sanders, L., Pfeil, J., Vivian, J., Bjork, I., Salama, S., Haussler, D., Vaske, O.
10.1101/716829 — Posted: 2019-07-30 — Discussion: 2022-01-24  GigaScience
Is it time to replace gzip? Comparison of modern compressors for molecular sequence databases
Kryukov, K., Ueda, M. T., Nakagawa, S., Imanishi, T.
10.1101/642553 — Posted: 2019-05-20 — Discussion: 2022-01-24  GigaScience
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing
Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.
10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24  GigaScience
A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework
Tekman, M., Batut, B., Ostrovsky, A., Antoniewski, C., Clements, D., Ramirez, F., Etherington, G. J., Hotz, H.-R., Scholtalbers, J., Manning, J. R., Bellenger, L., Doyle, M. A., Heydarian, M., Huang, N., Soranzo, N., Moreno, P., Papatheodorou, I., Nekrutenko, A., Taylor, J., Blankenberg, D., Backofen, R., Grüning, B.
10.1101/2020.06.06.137570 — Posted: 2020-06-08 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience

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