bioRxiv/medRxiv TRiP Review Activity

474 Reviews — All Partners — Genomics

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Recursive splicing discovery using lariats in total RNA sequencing
Hoppe, E. R., Udy, D. B., Bradley, R. K.
10.1101/2022.12.22.521701 — Posted: 2022-12-23 — Discussion: 2023-05-26  EMBO Press
Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
Gewirtz, A. D., Townes, F. W., Engelhardt, B. E.
10.1101/2021.10.27.466156 — Posted: 2021-10-28 — Discussion: 2023-05-26  EMBO Press
Z-Flipon Variants reveal the many roles of Z-DNA and Z-RNA in health and disease
Umerenkov, D., Herbert, A., Konovalov, D., Danilova, A., Beknazarov, N., Kokh, V., Fedorov, A., Poptsova, M.
10.1101/2023.01.12.523822 — Posted: 2023-01-13 — Discussion: 2023-05-24  EMBO Press
Tau polarizes an aging transcriptional signature to excitatory neurons and glia
Wu, T., Deger, J. M., Ye, H., Guo, C., Dhindsa, J., Pekarek, B. T., Al-Ouran, R., Liu, Z., Al-Ramahi, I., Botas, J., Shulman, J. M.
10.1101/2022.11.14.516410 — Posted: 2022-11-16 — Discussion: 2023-05-17  eLife
Co-obligate symbioses have repeatedly evolved across aphids, but partner identity and nutritional contributions vary across lineages
Manzano-Marin, A., Coeur d'acier, A., Clamens, A.-L., Cruaud, C., Barbe, V., Jousselin, E.
10.1101/2022.08.28.505559 — Posted: 2022-08-29 — Discussion: 2023-05-12  Peer Community In
Endo-parasitoid lifestyle promotes endogenization and domestication of dsDNA viruses
GUINET, B., Lepetit, D., Charlat, S., Buhl, P. N., Notton, D. G., Cruaud, A., Rasplus, J.-Y., Stigenberg, J., de Vienne, D. M., Boussau, B., Varaldi, J.
10.1101/2022.11.16.515002 — Posted: 2022-11-16 — Discussion: 2023-05-10  eLife
Unraveling the influences of sequence and position on yeast uORF activity using massively parallel reporter systems and machine learning.
May, G. E., Akirtava, C., Agar-Johnson, M., Micic, J., Woolford, J., McManus, J.
10.1101/2021.04.16.440232 — Posted: 2021-04-17 — Discussion: 2023-05-02  eLife
Multi-omics analysis identifies LBX1 and NHLH1 as central regulators of human midbrain dopaminergic neuron differentiation
Gomez Ramos, B., Ohnmacht, J., de Lange, N., Ginolhac, A., Valceschini, E., Rakovic, A., Halder, R., Massart, F., Klein, C., Krause, R., Schulz, M., Sauter, T., Krueger, R., Sinkkonen, L.
10.1101/2023.01.27.525898 — Posted: 2023-01-27 — Discussion: 2023-04-10  Review Commons
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
Ballard, J. W. O., Field, M. A., Edwards, R. J., Wilson, L. A. B., Koungoulos, L. G., Rosen, B. R., Chernoff, B., Dudchenko, O., Omer, A., Keilwagen, J., Skvortsova, K., Bogdanovic, O., Chan, E., Zammit, R., Hayes, V., Aiden, E. L.
10.1101/2023.01.26.525801 — Posted: 2023-01-27 — Discussion: 2023-04-10  GigaScience
The mutational signatures of poor treatment outcomes on the drug-susceptible Mycobacterium tuberculosis genome
Chen, Y., Jiang, Q., Peierdun, M., Takiff, H. E., Gao, Q.
10.1101/2022.11.20.517260 — Posted: 2022-11-21 — Discussion: 2023-04-01  eLife

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