bioRxiv/medRxiv TRiP Review Activity

32 Reviews — Review Commons — Genomics

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Transcription decouples estrogen-dependent changes in enhancer-promoter contact frequencies and physical proximity
Gomez Acuna, L. I., Flyamer, I., Boyle, S., Friman, E. T., Bickmore, W. A.
10.1101/2023.03.29.534720 — Posted: 2023-03-29 — Discussion: 2024-03-18  Review Commons
YY1 binding is a gene-intrinsic barrier to Xist-mediated gene silencing
Bowness, J., Almeida, M., Nesterova, T., Brockdorff, N.
10.1101/2023.11.22.568288 — Posted: 2023-11-23 — Discussion: 2024-03-18  Review Commons
DNA-binding factor footprints and enhancer RNAs identify functional non-coding genetic variants
Biddie, S. C., Hird, E. F., Weykopf, G., Friman, E. T., Bickmore, W. A.
10.1101/2023.11.20.567860 — Posted: 2023-11-20 — Discussion: 2024-03-18  Review Commons
NERD-seq: A novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs
Saville, L., Cheng, Y., Gollen, B., Mitchell, L., Stuart-Edwards, M., Haight, T., Mohajerani, M., Zovoilis, A.
10.1101/2021.05.06.442990 — Posted: 2021-05-07 — Discussion: 2024-03-11  Review Commons
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
Castillo, H., Godoy, F., Gilbert, C., Aguilera, F., Spicuglia, S., Marcellini, S.
10.1101/2023.08.30.555543 — Posted: 2023-09-01 — Discussion: 2024-01-26  Review Commons
DAJIN-assisted multiplex genotyping to validate the outcomes of CRISPR-Cas-based genome editing
Kuno, A., Ikeda, Y., Ayabe, S., Kato, K., Sakamoto, K., Suzuki, S., Morimoto, K., Wakimoto, A., Mikami, N., Ishida, M., Iki, N., Hamada, Y., Takemura, M., Daitoku, Y., Tanimoto, Y., Dinh, T. T., Murata, K., Hamada, M., Yoshiki, A., Sugiyama, F., Takahashi, S., Mizuno, S.
10.1101/2020.12.14.422641 — Posted: 2020-12-14 — Discussion: 2023-11-14  Review Commons
Identification of a Non-Canonical Ciliate Nuclear Genetic Code Where UAA and UAG Code for Different Amino Acids
McGowan, J., Kilias, E. S., Alacid, E., Lipscombe, J., Jenkins, B. H., Gharbi, K., Kaithakottil, G. G., Macaulay, I. C., McTaggart, S., Warring, S. D., Richards, T. A., Hall, N., Swarbreck, D.
10.1101/2022.12.16.520718 — Posted: 2022-12-17 — Discussion: 2023-06-07  Review Commons
Multi-omics analysis identifies LBX1 and NHLH1 as central regulators of human midbrain dopaminergic neuron differentiation
Gomez Ramos, B., Ohnmacht, J., de Lange, N., Ginolhac, A., Valceschini, E., Rakovic, A., Halder, R., Massart, F., Klein, C., Krause, R., Schulz, M., Sauter, T., Krueger, R., Sinkkonen, L.
10.1101/2023.01.27.525898 — Posted: 2023-01-27 — Discussion: 2023-04-10  Review Commons
Multiple shifts in gene network interactions shape phenotypes of Drosophila melanogaster selected for long and short night sleep duration
Souto-Maior, C., Lin, Y., Serrano Negron, Y. L., Harbison, S. T.
10.1101/2021.07.11.451943 — Posted: 2021-07-12 — Discussion: 2023-02-13  Review Commons
Copy number footprints of platinum-based anticancer therapies
Gonzalez, S., Lopez-Bigas, N., Gonzalez-Perez, A.
10.1101/2022.11.24.517816 — Posted: 2022-11-24 — Discussion: 2022-12-29  Review Commons

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