bioRxiv/medRxiv TRiP Review Activity

36 Reviews — Review Commons — Genomics

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The whole blood microbiome of Indonesians reveals that environmental differences shape immune gene expression signatures
Bobowik, K. S., Darusalam, C., Kusuma, P., Sudoyo, H., Febinia, C. A., Malik, S., Wells, C., Gallego Romero, I.
10.1101/2022.04.24.489025 — Posted: 2022-04-25 — Discussion: 2024-06-14  Review Commons
The GC-content at the 5'ends of human protein-coding genes is undergoing mutational decay
Qiu, Y., Kang, Y. M., Korfmann, C., Pouyet, F., Eckford, A., Palazzo, A. F.
10.1101/2024.03.12.584636 — Posted: 2024-03-14 — Discussion: 2024-05-21  Review Commons
DNA-binding factor footprints and enhancer RNAs identify functional non-coding genetic variants
Biddie, S. C., Hird, E. F., Weykopf, G., Friman, E. T., Bickmore, W. A.
10.1101/2023.11.20.567860 — Posted: 2023-11-20 — Discussion: 2024-03-18  Review Commons
Post-meiotic mechanism of facultative parthenogenesis in gonochoristic whiptail lizard species.
Ho, D. V., Tormey, D., Odell, A., Newton, A. A., Schnittker, R. R., Baumann, D. P., Neaves, W. B., Schroeder, M. R., Sigauke, R. F., Barley, A. J., Baumann, P.
10.1101/2023.09.21.558237 — Posted: 2023-09-22 — Discussion: 2024-03-18  Review Commons
Integrated multiplexed assays of variant effect reveal cis-regulatory determinants of catechol-O-methyltransferase gene expression
Hoskins, I., Rao, S., Tante, C., Cenik, C.
10.1101/2023.08.02.551517 — Posted: 2023-08-05 — Discussion: 2024-03-18  Review Commons
Transcription decouples estrogen-dependent changes in enhancer-promoter contact frequencies and physical proximity
Gomez Acuna, L. I., Flyamer, I., Boyle, S., Friman, E. T., Bickmore, W. A.
10.1101/2023.03.29.534720 — Posted: 2023-03-29 — Discussion: 2024-03-18  Review Commons
YY1 binding is a gene-intrinsic barrier to Xist-mediated gene silencing
Bowness, J., Almeida, M., Nesterova, T., Brockdorff, N.
10.1101/2023.11.22.568288 — Posted: 2023-11-23 — Discussion: 2024-03-18  Review Commons
NERD-seq: A novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs
Saville, L., Cheng, Y., Gollen, B., Mitchell, L., Stuart-Edwards, M., Haight, T., Mohajerani, M., Zovoilis, A.
10.1101/2021.05.06.442990 — Posted: 2021-05-07 — Discussion: 2024-03-11  Review Commons
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
Castillo, H., Godoy, F., Gilbert, C., Aguilera, F., Spicuglia, S., Marcellini, S.
10.1101/2023.08.30.555543 — Posted: 2023-09-01 — Discussion: 2024-01-26  Review Commons
DAJIN-assisted multiplex genotyping to validate the outcomes of CRISPR-Cas-based genome editing
Kuno, A., Ikeda, Y., Ayabe, S., Kato, K., Sakamoto, K., Suzuki, S., Morimoto, K., Wakimoto, A., Mikami, N., Ishida, M., Iki, N., Hamada, Y., Takemura, M., Daitoku, Y., Tanimoto, Y., Dinh, T. T., Murata, K., Hamada, M., Yoshiki, A., Sugiyama, F., Takahashi, S., Mizuno, S.
10.1101/2020.12.14.422641 — Posted: 2020-12-14 — Discussion: 2023-11-14  Review Commons

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