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455 Reviews — All Partners — Genomics

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Limited evidence of tumour mutational burden as a biomarker of response to immunotherapy
Gurjao, C., Tsukrov, D., Imakaev, M., Luquette, L. J., Mirny, L. A.
10.1101/2020.09.03.260265 — Posted: 2020-09-04 — Discussion: 2024-10-14  eLife
Increased inflammatory signature in myeloid cells of non-small cell lung cancer patients with high clonal hematopoiesis burden
Sim, H., Park, H. J., Park, G.-H., Kim, Y. J., Park, W.-Y., Lee, S.-H., Choi, M.
10.1101/2024.01.02.573827 — Posted: 2024-01-02 — Discussion: 2024-10-10  eLife
Sequence characteristics and an accurate model of high-occupancy target loci in the human genome.
Hudaiberdiev, S., Ovcharenko, I.
10.1101/2023.02.05.527203 — Posted: 2023-02-05 — Discussion: 2024-10-07  eLife
Expression of Most Retrotransposons in Human Blood Correlates with Biological Aging
Tsai, Y.-T., Seymen, N., Thompson, I. R., Zou, X., Mumtaz, W., Gerlevik, S., Mufti, G. J., Karimi, M. M.
10.1101/2024.02.09.579582 — Posted: 2024-02-12 — Discussion: 2024-10-02  eLife
High-speed whole-genome sequencing of a Whippet: Rapid chromosome-level assembly and annotation of an extremely fast dog's genome
Nebenfuehr, M., Prochotta, D., Ben Hamadou, A., Janke, A., Gerheim, C., Betz, C., Greve, C., Bolz, H. J.
10.1101/2024.08.16.608262 — Posted: 2024-08-19 — Discussion: 2024-09-27  Gigabyte
Transcriptomic profiling of Schlemm's canal cells reveals a lymphatic-biased identity and three major cell states
Balasubramanian, R., Kizhatil, K., Li, T., Tolman, N., Bhandari, A., Clark, G., Bupp-Chickering, V., Zhou, S., Peregrin, J., Simon, M., Montgomery, C., Qian, J., John, S.
10.1101/2023.08.31.555823 — Posted: 2023-09-03 — Discussion: 2024-09-19  eLife
Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds
Bortoluzzi, C., Restoux, G., Rouger, R., Desnoues, B., Petitjean, F., Bosse, M., Tixier-Boichard, M.
10.1101/2024.02.22.581528 — Posted: 2024-02-23 — Discussion: 2024-09-19  Peer Community In
Non-allelic homologous recombination driven translocation explains histidine-rich protein 3 deletion mechanism in Plasmodium falciparum
Hathaway, N. J., Kim, I. E., Young, N. W., Hui, S. T., DeFeo, R., Giesbrecht, D., Liang, E. Y., Nixon, C. P., Juliano, J. J., Parr, J. B., Bailey, J. A.
10.1101/2022.12.07.519189 — Posted: 2022-12-08 — Discussion: 2024-09-17  eLife
Genome-wide mapping of native co-localized G4s and R-loops in living cells
Liu, T., Shen, X., Ren, Y., Lu, H., Liu, Y., Chen, C., Yu, L., Xue, Z.
10.1101/2024.06.03.597194 — Posted: 2024-06-04 — Discussion: 2024-09-16  eLife
Regulatory genome annotation of 33 insect species
Asma, H., Tieke, E., Deem, K. D., Rahmat, J., Dong, T., Huang, X., Tomoyasu, Y., Halfon, M. S.
10.1101/2024.01.23.576926 — Posted: 2024-01-25 — Discussion: 2024-09-16  eLife

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