bioRxiv/medRxiv TRiP Review Activity

450 Reviews — All Partners — Genomics

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Transcriptomic profiling of Schlemm's canal cells reveals a lymphatic-biased identity and three major cell states
Balasubramanian, R., Kizhatil, K., Li, T., Tolman, N., Bhandari, A., Clark, G., Bupp-Chickering, V., Zhou, S., Peregrin, J., Simon, M., Montgomery, C., Qian, J., John, S.
10.1101/2023.08.31.555823 — Posted: 2023-09-03 — Discussion: 2024-09-19  eLife
Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds
Bortoluzzi, C., Restoux, G., Rouger, R., Desnoues, B., Petitjean, F., Bosse, M., Tixier-Boichard, M.
10.1101/2024.02.22.581528 — Posted: 2024-02-23 — Discussion: 2024-09-19  Peer Community In
Non-allelic homologous recombination driven translocation explains histidine-rich protein 3 deletion mechanism in Plasmodium falciparum
Hathaway, N. J., Kim, I. E., Young, N. W., Hui, S. T., DeFeo, R., Giesbrecht, D., Liang, E. Y., Nixon, C. P., Juliano, J. J., Parr, J. B., Bailey, J. A.
10.1101/2022.12.07.519189 — Posted: 2022-12-08 — Discussion: 2024-09-17  eLife
Genome-wide mapping of native co-localized G4s and R-loops in living cells
Liu, T., Shen, X., Ren, Y., Lu, H., Liu, Y., Chen, C., Yu, L., Xue, Z.
10.1101/2024.06.03.597194 — Posted: 2024-06-04 — Discussion: 2024-09-16  eLife
Regulatory genome annotation of 33 insect species
Asma, H., Tieke, E., Deem, K. D., Rahmat, J., Dong, T., Huang, X., Tomoyasu, Y., Halfon, M. S.
10.1101/2024.01.23.576926 — Posted: 2024-01-25 — Discussion: 2024-09-16  eLife
Essentiality and dynamic expression of the human tRNA pool during viral infection
Aharon-Hefetz, N., Schwartz, M., Dahan, O., Stern-Ginossar, N., Pilpel, Y.
10.1101/2024.04.25.591047 — Posted: 2024-04-30 — Discussion: 2024-09-05  Review Commons
Identification of novel myelodysplastic syndromes prognostic subgroups by integration of inflammation, cell-type composition, and immune signatures in the bone marrow
Gerlevik, S., Hama, S., Seymen, N., Mumtaz, W., Thompson, I. R., Jalili, S. R., Kaya, D. E., Iacoangeli, A., Pellagatti, A., Boultwood, J., Napolitani, G., Mufti, G. J., Karimi, M. M.
10.1101/2024.03.11.584361 — Posted: 2024-03-13 — Discussion: 2024-08-20  eLife
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
Pipes, L., Nielsen, R.
10.1101/2022.12.06.519402 — Posted: 2022-12-07 — Discussion: 2024-08-15  eLife
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases.
Tesson, F., Planel, R., Egorov, A. A., Georjon, H., Vaysset, H., Brancotte, B., Neron, B., Mordret, E., Atkinson, G. C., Bernheim, A., Cury, J.
10.1101/2024.01.25.577194 — Posted: 2024-01-26 — Discussion: 2024-08-12  Peer Community In
From sequence to molecules: Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways
Gu, S., Shao, Y., Rehm, K., Bigler, L., Zhang, D., He, R., Shao, J., Jousset, A., Friman, V.-P., Wei, Z., Kummerli, R., Li, Z.
10.1101/2023.10.30.564663 — Posted: 2023-11-01 — Discussion: 2024-08-12  eLife

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