bioRxiv/medRxiv TRiP Review Activity

416 Reviews — All Partners — Genomics

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DNA-binding factor footprints and enhancer RNAs identify functional non-coding genetic variants
Biddie, S. C., Hird, E. F., Weykopf, G., Friman, E. T., Bickmore, W. A.
10.1101/2023.11.20.567860 — Posted: 2023-11-20 — Discussion: 2024-03-18  Review Commons
Post-meiotic mechanism of facultative parthenogenesis in gonochoristic whiptail lizard species.
Ho, D. V., Tormey, D., Odell, A., Newton, A. A., Schnittker, R. R., Baumann, D. P., Neaves, W. B., Schroeder, M. R., Sigauke, R. F., Barley, A. J., Baumann, P.
10.1101/2023.09.21.558237 — Posted: 2023-09-22 — Discussion: 2024-03-18  Review Commons
An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
Chen, Y., Koelliker, R., Mascher, M., Copetti, D., Himmelbach, A., Stein, N., Studer, B.
10.1101/2023.12.05.570088 — Posted: 2023-12-05 — Discussion: 2024-03-18  Gigabyte
Switching of RNA splicing regulators in immature neuroblasts: a key step in adult neurogenesis
Bernou, C., Mouthon, M.-A., Daynac, M., Demaille, B., Barroca, V., Couillard-Despres, S., Dechamps, N., Menard, V., Bellenger, L., Antoniewski, C., Chicheportiche, A., Boussin, F. D.
10.1101/2023.03.12.532290 — Posted: 2023-03-14 — Discussion: 2024-03-13  eLife
NERD-seq: A novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs
Saville, L., Cheng, Y., Gollen, B., Mitchell, L., Stuart-Edwards, M., Haight, T., Mohajerani, M., Zovoilis, A.
10.1101/2021.05.06.442990 — Posted: 2021-05-07 — Discussion: 2024-03-11  Review Commons
Data-driven design of a tool to promote the investigation of understudied genes
Richardson, R. A. K., Tejedor Navarro, H., Amaral, L. A. N., Stoeger, T.
10.1101/2023.02.28.530483 — Posted: 2023-03-01 — Discussion: 2024-03-11  eLife
Multiomics of human aortic endothelial cells reveals cell subtypes with heterogeneous responses to canonical endothelial-to-mesenchymal perturbations
Adelus, M. L., Ding, J., Tran, B. T., Conklin, A. C., Golebiewski, A. K., Stolze, L. K., Whalen, M. B., Cusanovich, D., Romanoski, C. E.
10.1101/2023.04.03.535495 — Posted: 2023-04-06 — Discussion: 2024-03-01  eLife
Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
Wolf, M., Ferrette, B. L. S., Coimbra, R. T. F., de Jong, M., Nebenfuehr, M., Prochotta, D., Schoeneberg, Y., Zapf, K., Rosenbaum, J., Mc Intyre, H. A., Maier, J., de Souza, C. C. S., Gehlhaar, L. M., Werner, M. J., Oechler, H., Wittekind, M., Sonnewald, M., Nilsson, M. A., Janke, A., Winter, S.
10.1101/2023.12.12.571260 — Posted: 2023-12-13 — Discussion: 2024-02-14  Gigabyte
The genomic landscape of transposable elements in yeast hybrids is shaped by structural variation and genotype-specific modulation of transposition rate
Henault, M., Marsit, S., Charron, G., Landry, C. R.
10.1101/2023.05.08.539935 — Posted: 2023-05-09 — Discussion: 2024-02-01  eLife
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
Castillo, H., Godoy, F., Gilbert, C., Aguilera, F., Spicuglia, S., Marcellini, S.
10.1101/2023.08.30.555543 — Posted: 2023-09-01 — Discussion: 2024-01-26  Review Commons

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